Gene detail

Detailed information of ANN26204-RA in Leptoseris scabra

Genomic Location: Scaffold_2__1_contigs__length_39127999:35883628...35919879
NR annotation: XP_020618453.1, ubiquitin carboxyl-terminal hydrolase 32-like [Orbicella faveolata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN26204-RA

ATGGGCCTTAGAGAGTCAAAACTTTGTTTCCTCGCTTACGAGGAAGCGACCAAGCGAGTTACCGACGATGAAATGCAGCGCTTAAGACTGGCGTTTAAACGCTGTTCTGGCGTGAGTGGATTCATGCCACAGTCGGTGTTTTTGCGGGAAGTTCTTGGTGATGGTGTACCGAGTAAAGTCGCCGAGCATATTTATACAGCATTTGGTGGCTCGAATAAGGGGATAACATTTCGAGATTTGCTCTGTGGTCTTGTTCTTCTGACCAGAGGCACACGTGAAGAAAAGATAAAATTCATTTTCAATATTTATTCAACTGATGGAGCGTTCGTCTACAAAGATAATATGGAGAGTATTATTTTGGCTTGTGATGGTGGTAATATCCCTCAGCCAGTCATCGATTGCTTCTGCGAGTGTGATCGGCTGTCATTTGAGGAGTTTTCAAGTTGGTTGGTAAGGAACCCTGATGTGACCACACTCACAAGATGGCTACTCATCGTCAGTAATGGCTGCAGTGTTCAGTTGACAGACAGCAGTGAGACGCCCACATTTTACCAGACATTGGCCAGTGTCACTCACTTACAAGAAACAGATGTAATGGAGCTGGAGAAGAGGTACTGGACATTAAAGTCTGGTACAAGAACTGGCAAATTTGATCTGGAAACATTTACTCCGCTGGTGTCACCTCCCATTCCACAGTGTCTCTGTCCAGGGCTCTTTAATGCTTTTGATGAAAATCAAGATGGTCATATTGATTTCCGTGAGTTGGCTTGTGGTATCTCCAAATGCTGCAGAGGCCCAAATTCTGAAAGGCAGAAGTTCTGTTTTAGGGTGTTTGATTCTGATGGAGATGGGTTTCTCTCAAGAAGTGAAATTGAATTAATGTGTAAAGCTCTCATAGAAATCAGAAAGGAAAATGTTGGAGAAAAGGACACAAGTGATATTTGGGAAAAGGATATTCCTCTAATGGCAACTGAAATTCTTAGTGACTGTAGCAAAGGCGAGGATGGCCAGATCACTTTAGAAGAATACAAAGAGTGGGCCGCAACTCACAGATTTTCTCACATGTTTCCCAGGTTGTTGGTCCAGGTCTGTCACATTGTACTTGGATTGAGGCCAGTCACAAGACAGGTTGAACTTCAAGTTGTCAGAGGATGGCTTGAGCATGAGTACCAGCATGAGCTTAAACCAGGCACCATTTGGTATCTAGTTGCCGTTTCTTGGTGGCGGATCTGGAAAGAGTATGTCAGTTATCAGCCTTACATTAGAAGAAGCTCAACTGGTGCCCTTCGGAAGAATGGCACGTTACCATCAAGACTAAACCAAGTGAATTACGTATCCCCTGGAAACCCAGGACAAGCTTGGAGCAATGATCCGAATCTGAAGACAAGCTCATTGGGACGACGTGAATCTCACCCCATGTTTAACCAGGGGCAGACGGCTGTAAGTCCATCTGGTGCAATGAATGGCCACTGTTCACCGGGGACAGTCTGTGGTACTCAGGTGCCTGGGCCTGTCGACAATGTTCCTCTTGTTGAAAATGAAACAAGGAAGGTGATGATTTTAACTGGTGAAGGAGGCAAGTTAAAACGCAATATTCCTTTGTGTAGAGGAAGAGACTTTGAGATCCTCCCTGAGTCTGTATGGAGAGCACTTCAGCAGTGGTATGGAGGAGGACCTGCTCTTCCAAGAACGGTCATTATTCCTTCAAATGGTGATCCAAACCCAGAGCTAGAGTTGTATCCAGTCAGCTTGCGGCTATTTCGGCACTCTCCTCCTCCAACTCGCGGTGGCATCACGACATGGACAGGTGTTGGTTTTGGGCTGAGTAGCTTTGGATTTGGTACTAATTCTCTGACCACTCCCCATGCCCCACCCAAGAGGTACCTGGCATATGTGGCTTCCTTTAGTCGAATGAACACCATACAGCAGGTATATGATTACCTGTGTGCACGCCTCAGAATTCGTAATGAAGATATGCGACTCTGGAGTATGGAGGATGAGAGCAAATTAAGGCTGCTAGAGGAGGACAATTCTTCTCTAGAAAAATTAGAAATCAAGGACAATCATGCTGTGCTTATTGAAGTTCGCAACAGAGACATGAGCTGGCCAGAAGAGATGTCTTCCTTAGCAAACAATAGAAGTCTGAGAGAAAAACTTAATTTAGAACCCACAGAAAAGGGAGCAACTGGCCTCAGTAACCTGGGAAACACATGCTTCATGAACTCTGCACTACAGTGTCTCAGCAATACTCAGCCCCTCACACAGTACTTTACTAGCAAATGCCACTTACATGAATTAAACAGAACAAATCCTTTGGGTATGAAAGGCCACATAGCTCGTCGTTATGGAGACCTTGCTGAAGACTTGTGGAGTGGCAGCTCCCGCAGCTTGGCACCATTGAAATTGAGGTGGACAATAGGGAGGTATGCACCGAGATTTAATGGATTTCAGCAGCATGACTCCCAGGAATTTCTGTCATTTCTTTTGGACGGTTTACATGAAGACTTGAACAGAGTCCATCTGAAGCCATATGTTGAACTCAAGGACAGTGATGGCAGACCAGATGAAGAAGTAGCACATGAGGCATGGGATAATCACCTGAAGAGAAATCAGTCAGTTGTTGTGGACCTGTTTCAAGGCCAGCTGAAGTCTCAAGTCAGGTGTTTGGAGTGTGGTTATGTCAGTGTTCGGTTTGATCCGTTCACTTTCCTTTCCTTACCCTTGCCGATGGACAGCTCAATCTACGTGGAAGTCATTGCTGTCCATCTCGAAGGTACAACACCCACAAAGTATGGTTTGCTTCTCAGTAATGATGACAGATACAAGGATGTTAAGAGAGAGTTAACCAAGTACTGTGGGCTTGTCAGCTCACAGCTTCTTTTGGTCGAGATATTTGGAGCTTCTGTTAAGGGAGCTCAGAAATCAACAAAGTGCCTAGGCGCTTACCCAACTTGTTTCACTAAGCAAGAACCTAGAGATGATAACTTTAATTTTGCTGCTCGACAGAGCTTACCATCAGACATGCAGAAGATTCGTACTGCACTGGCTGGGGTGCTTTATGCATATGAAATCCCTCTTCCCACAATAACCTGTGAAGGAGAATGCAACACTTCTACAACGCCAGGGACAGAGGAAGAAAAGGTTTCATGTAATGCATGTTCTGCGAAATCTGGAAACCAATGTTCTGGAAATCGAAGTACAAACTGTCAAACAGTTGGAGGCGCTTGTAGTAATGCATCTAATGTATCAAACAGCGAAGAAATGGAAGGGAAGGAAGGCAAGTCTTCAGGAACAAGCTCTGAAAACAGCTCAGAAGACAATGAAAGCAGACTAAGAGTACAAGAAGACTGGTTTGCGGAAGGGCAGAAGAACAAAAAAAAGATTTCTTCTAGCCCAATTAAACGGGTGAGCCCGAAACTCCGGAAAAAGTTAAGCCCCAAGTTTACTGGGGGATTCAGTTTAACTGCAACATTAAGGAAGTCTTCATCTTCATCGTCCTCAATGGAATTGACTGAAGGGAGTTATGTTTCAAATTCTGATTCTGGAATCAGTTTAAGTACGGAGAATTCTCCAAATCGTAAAACTCTTTCTGTTCCTGGAAACGTGGATGCTGGCTCCAGGAATTCAAGCATTTCATCCACACCCTCAGGGGGACCTTCACCATATTTGGGTTACTGTTTCAGTGGATTTGTTGTTGCAATGCACAGAAAAACAATTCGTTCAGATGCGTATTTCCTCTCACCACAAAAGAACCGACCTGGTTTGTTTGGGATTCCCGTCATTGTACCATGCACATCTAAAACCAGACAGTGTGATCTGTATCAAGGGGTCTGGACCCAAGTGGCCAGGCTGCTCAGCCCACCAGCACCTGGAGAAACGAACTGTAAAGATGGGGATGCAGGTGATTATCCATTTGAGCTGCGGGCAGTTCAGAAGGATGGACTCACATGTGCTTGGTGTCCGTGGTACAGGTTTTGCCATGGATGTGTGATTAAATGCAGCGAACAGGAATTTGGCTGCAGTAGTTCATACATAGCTATAGAGTGGGACCCTACAACACTGCACCTGAGATACCAGACGTCACAAGAGAAAGTGTTCACGGAGCATGAGAGCGTGGAGAGAAGCAGAAAGCAGCAAACGGAACCCATTGACTTGTATGAGTGCTTCAGAGCTTTTACTAAAGAGGAAGAGCTTGGAGAAGATGAATTGTGGTATTGCAACAAATGCAAGAAACACAGATTAGCGGTGAAGAAGCTGGATATATGGAGCCTGCCGCCAATCTTGATCATACACTTGAAGCGGTTTCAGTTTGTCAACGGCCACTGGGTAAAGTCAAATAAGATTGTACAGTTTCCTATGGCGGGTTTTGACCCATCAGCTTTCCTGGCCAAGCAGTCAACAAACACGAAATCTAGCGCGAGTTCCTCAGAGTCTGGAGTCACCACAGTTAATGTTAAAAGCAGCGAGGAACTTGAAACCGAGGACGAGGTTGAGGAGAAAAGAGAGCGAACTTCTCGCCATGGGAGTGAGGAGTCGTCTTCCCAAAGCTCAGCCGGAGAACTAAGTTCAAGTCAAGTTGAACTCAATCAAAACAGCAAGCCTCCTTCGCGGCAGTCTTCATGTTTAAGCCTTAACTCAGCCAAAGTTCACCCCGAAGTGACGCCTGAAAATCGATCATTTACTCCGGTAGAAAATCCTGATTCTTCCGATTTCGCGGGCTTGGATTCTGCAGATGTTCGTAATGGTCAACGGGAAAATGTTCGTAAAGTATTAGCCGCTTCGAGGAGCGAAGGCTCACAAAGTGAGATAACAACCTACAGAATATACGCCATGTCGTGTCACACGGGAGTGCTGGGTGGAGGACACTACATTTCATACGCTCACAACCCGAACAACAAGTGGTACTGTTATAATGACAGCAGCTGTAAGGAGTGTGACAGTACCAAGCTCCAGCAAGATTCCCCGTACATGTTGTTCTATCAGCAAGGTGGTCTGGATGAACGAACATTTCTTCCCAACTTTAATGGCCAACCACCAGACTCTGCCAGCGACGACGAAGAATACGAGAACGATGTTAGGAGACTTTGCATCGTCCAATAA

Transcript

ANN26204-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F8VPZ3	Ubiquitin carboxyl-terminal hydrolase 32 OS=Mus musculus OX=10090 GN=Usp32 PE=2 SV=1
Q8NFA0	Ubiquitin carboxyl-terminal hydrolase 32 OS=Homo sapiens OX=9606 GN=USP32 PE=1 SV=1
M9PD06	Ubiquitin carboxyl-terminal hydrolase 32 OS=Drosophila melanogaster OX=7227 GN=Usp32 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003552 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13202 all species →	EF-hand_5	EF hand	Domain	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF06337 all species →	DUSP	DUSP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006615 all species →	Domain	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	Interproscan
IPR050185 all species →	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR035927 all species →	Homologous_superfamily	DUSP-like superfamily	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21646 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11837	USP6_32; ubiquitin carboxyl-terminal hydrolase 6/32	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.