Gene detail

Detailed information of ANN26237-RA in Leptoseris scabra

Genomic Location: Scaffold_2__1_contigs__length_39127999:36553628...36565200
NR annotation: CAH3103667.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN26237-RA

ATGGAGGAAGGATCAGAGAGGATTTCGACTCCAATTCGCTCACCATCAGAGAAGGATTCTGTAATCCTAAGCCGCGCCAGCGCCTCAAGTTCACCTTTTGGTTTTCGCAAGGCTGCACTTAGTCCTCCGACTGGCGTGCTACGGAGGGAATCCTCTGGTTCATTGTCACCTGAAGGCGATGACTTTTTCCACAGCGTTGAAGATAAAGATGACGACGATTGGGACACCGATTTAGAGATGGATGAGGGAAAAGAGGAATATGACGTGACAGGAAGAACAACTTACCTTCAAGCTTGTAGAGATGCGGGAGTTATCCCAGTCTCATATTTTCATCGAAACATGCAGCAAGCTGAAGTTGATATCAAGCATCATGGGCTAGGCCCCCTGGGTGCGAAGGCAATAGCAATAGCTTTAGTGACAAACACATCTGTCATCAAGTTAAACTTGGCAGATAACTGGATTGGTGCTGAGGGAGCTGGTTACATTGCAGAAATGCTACGAGAAAACTGCTATATCTCTGACCTGGACTTGTCAGAAAACAAGCTTGGAGTTCATGGTGCAGAATCAATGAAGGATATTTTGTTACACAACTCAAACATCACAAGATTTACTGCAAATGGAAATGACTTTGATGATAAGGCAGTTCAAATTCTTTCTGAAGCAATGCAGCATAATAACAGAGTGAAATATTTCAGCCTGAGTCATAATCAACTGGGAGAAAAGGGAGGACAATACTTGGCACCTGCGATAGCTGCTAATGATACAATAGACCATTTGGATTTAAGCTGGAATCACTTAAGAAACAAAGGTGCTTGTGCTGTGGCCTTATCTTTAAAGGAAAATTTCACTTTGAAGATTCTAAACCTAGCATGGAATGGATTTGGTAATGATGGTGCACTTGCCATGGGTGAAGCACTTAAAGTAAACTCTACACTTAGAAAACTGGATTTAACAAATAACAGGATAACTGCAGAAGGTGCAGTGTACTTAGCCAAAGGATTGATGGTCAACACAAGTCTCCAGATTTTGAAGATCGGCAAGAATCCCATGCAGAGTCCTGGAGCATACGCTCTTGTGAACGCCATGAAAAATAACCCAGAATCTGTGTTGATAGAGATTGATTTCACGGACATCACTGTAAACAATGACTTCGTAGAGCTGTGCAAAGAGGTGCAACAAATGCGACCCACTATGAAGATAAATCATGGTGGTACGGGCGGGGCAGCCTTCAAACCTAAGCCTCGTCCATCACCCATGAAAATACTCAAGAACTGGATAGAGGGCAATCAAATGAGGCTACTGGATTTGTTTAACACTCTGGATAAAGACAAGAGCATGAATATTACGGTCAAGGAATTTGCAGATGGATTAAAGGAGACAGGAATTGACATGAATTATTACGAACTTTACAAACTAATCGACAGCCTAGACAAAAACAAAGATGGTGAAATCAATTACAGTGAACTTGTGATGGGCTCCCTAGAACAACAAATGGAAGACAGGAAAGAAAAGATTAAGGAGAAAGCACAAAACGCAAGAAGGCAAAGGATTTTATCACCACACTACTCAGTGACGGACAAAACTGGAGATGGCATTGTCATCGAGTTCACAGAGCAGGGAAGGAAGGTACATGAAAATACTGTCGGTGCTGCGACCAACGCTCCCCCTTACGATTTCCACATGCTGAATTTCCGCAACTACGTCCATCTCTCAAAGTACGCGCACGATCCTTTGGTGCTGGGTGAAAAAGCGTTCCAACTCACAGGTGAAGGCAGTGGTTTGCTTGGATTGCCCGGGGATATGACACCCACCTCGAGGCTTGTGCGTGTCGCGACGTTGATGAACTTTGCTGATCCAGTCAAAACAAGCAAAGAAGCTGTTAACTTGGCTTTCCACCTCCTCAACACCGTCGACATCCCCCACGGAGTGACTGCTGATCATAAGCACGAGGGCTTCGCAGACTACACTTCCTGGGCGGTGGCCAAGGACCTCACAAACAACGCTCTCTATTTCCGGAACTACGAAGATCTCACTATCCGCGTGGTGTATCTGGACAAGGTAGATCCAGGAACAAAGCTCAAGATCAAAATGGGATTACCGATTGGAGGGTTTAAGGACGTCACCAGTGAGATGAAACCTGCTGGGGTGCACACCGAACTGTAA

Transcript

ANN26237-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54965	Bile salt hydrolase/transferase OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=cbh PE=1 SV=3
A0JPI9	Leucine-rich repeat-containing protein 74A OS=Rattus norvegicus OX=10116 GN=Lrrc74a PE=2 SV=1
Q0VAA2	Leucine-rich repeat-containing protein 74A OS=Homo sapiens OX=9606 GN=LRRC74A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001691 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF02275 all species →	CBAH	Linear amide C-N hydrolases, choloylglycine hydrolase family	Domain	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052394 all species →	Family	Leucine-rich repeat-containing protein	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR029132 all species →	Domain	Choloylglycine hydrolase/NAAA C-terminal	Interproscan
IPR029055 all species →	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24114 all species →	LEUCINE RICH REPEAT FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN26237-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.