Gene detail

Detailed information of ANN26242-RA in Leptoseris scabra

Genomic Location: Scaffold_2__1_contigs__length_39127999:36615451...36618195
NR annotation: CAH3019383.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B0TNY4	Co-chaperone protein HscB homolog OS=Shewanella halifaxensis (strain HAW-EB4) OX=458817 GN=hscB PE=3 SV=1
A8H2M9	Co-chaperone protein HscB homolog OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) OX=398579 GN=hscB PE=3 SV=1
A3QFD2	Co-chaperone protein HscB homolog OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) OX=323850 GN=hscB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008878 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07743 all species →	HSCB_C	HSCB C-terminal oligomerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004640 all species →	Family	Co-chaperone Hsc20	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR036386 all species →	Homologous_superfamily	HscB, C-terminal domain superfamily	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR009073 all species →	Domain	Co-chaperone HscB, C-terminal oligomerisation domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14021 all species →	IRON-SULFUR CLUSTER CO-CHAPERONE PROTEIN HSCB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001671 all species →	Molecular Function	ATPase activator activity	Interproscan
GO:0044571 all species →	Biological Process	[2Fe-2S] cluster assembly	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0051259 all species →	Biological Process	protein complex oligomerization	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04082	hscB, HSCB, HSC20; molecular chaperone HscB	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.