Gene detail

Detailed information of ANN26268-RA in Leptoseris scabra

Genomic Location: Scaffold_2__1_contigs__length_39127999:36861734...36871332
NR annotation: CAH3103872.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN26268-RA

ATGGCGGCAAAGGAAGGATTGAAATGGCAAGAACGTTTGCCAGAACACCCTTTATTTCAAGAACTTTCGTATCCAGATGACAGGACAAGCTCAAGAATAAATGAGTACTCTCAAGAAAGAGCAACAAAGAATATTTTGATTGAAAACGATGGTGAAATATTTGTGTGGAATTCCGGAGAGAAGAGCTTGCTGACAGCAAATCTAAAGAACTTGCATTTTGAAAATGAACGTTATGATGAATTCCAAACCTTTGCTTGCACTGACATTCCCCTGTTTGATGTGGATTCTATGCTGTTCAGCCCTTCGTCAAAGTATCTTGCGCTCGTAGGGGAAAGAGGAATATCAGTTCTTGAGAAGCCAATGAGATGGGGCAAGTTTGCTGCATATGATGGCGGAAGTGAAGAGGTTATCTGCAGGACAATTCCAATTGATCCACGATTCTTTGTTACTAATCACAAGATAAAGGTTCTTGATGCTAAGTGGCACCCAGGAAGTCAGGCAGACATCCATCTTATGGTTCTTACGTCAGATAACCATTTGAGACTTTACAATGTGCTTAAACCAACTTCTCCTGAAGAAACAATTCCATTGGGAGAGTCATCTTCATTTACCGCTGAATACAGCAGGAAGTCTATGTCTGTTGGATTAATGTCATCATTTGCAGCTGCCCTGGGAGAGAGAGCCATTGCATTTGATTTTGCTCCAGCTGTCGCTGATGTTAATGCAAGAAGGAGCTCAAGATCAAGTGAAACAGATGCAGAAGTTGCTCATCCTGTGTTTATTTTGAGAGAAAATGGAGATGTCTATTACCTTCTTCATAGAATTGTCCAAACAAGGCATCAGGCACCACAGCTGAATGGCCCACTGACCATGTACCCTGCGGCAGATGACAACTATGGCCTAGACGCTTGCTCTTTGCTTTGTCTACATTCCCAGCCTCCTGTTATTGCCATGGCAACTGGAAGTGGGAAAATTTATCACTGTATTGCTTTGGAAACTGAAAAGTCTTATGACCCTGAGGAGGAAGTATCATCCTGGAGCAGACATACTGTTGACAGCCATCCAAATCTTTCCCTCTTTGTTCATGAATGTGTTGAGCTGCAGTTGTCTTTCTTACCAGAAACTACAGAATCACAATCTGACAGAAGTTCTACTGGAGATGACTTGGATGAAAATGAAAACCAGTCTGTTTTAAGGCTTCAGAAAGATCCAGAATCGCCGTACCAGTATCACTGTTCACATGGCGCTGGAGTTCATAGCATTTCATTACCCTGGGTGAACAAATTACAAGGTTATTGTTTAGAAGATGACCAGGGTCATTTCGATCCAGATGAAGCAGCCATTGTGTATCATATGATTTGTACATCACCAACAGCTGTGAGGTCATTATCTCCAGTCCTTGGTGTTTGTGTCATAAAAAGCAAAATTCTTGGTTCAGCAATGTTGTGCTTGACTTCAAACATGGAGTGTATTGTTAAACCTTTGAGTCTTCTTTCCAGACCACCTTCTCCTCTGACAACAGAAACAGATGAAGAAACCAGTAATGGAAGCCCTGTTGTTTCACCCATACGGCATTTGAATGTAGGATTGTTCAGAAGTCAGATTGAGAAGATTTTAACAAGAAACACGTCGACTCCTCTCTTAAGAGCGGGTGACGCATCTGAGAAGCTTTCTCAGGATGACTGTTTTCAGCTTCTTAGTCAAGCACAAGAGATCTTACGGAGAGAATACATTCAAAAACAGAACAAAGCCAGAGAAGAAATAGAAAAGAGAATCTCCATACTTAAAGACCAAAAGGAAAAGCAGACCCAGCACCTAGCAAAGCTGCACGGCCTCACGGGGGAGCTCACAGAAAAAGCAGAAATACTTGGAGAAAAGCTGGTGGATACTTCTGACAAGCATGAACGGCTCCTGCAAAGGCTTGAAGGTCTCTACAAATATATCCACAGTGGCATTCCAGTTTTATCCAATGCTGAGAGCAAAATGAAAAATGAGTTAGAAGAGATAGAAGAATACCTCAAATTCCACAGAGAATCTCTTCAACAGATTAAAGCTAAAAACTCATATACAAGAAAGAGCCCAAGAAGATCAACATCTGTGAAGTCGCCCGTTGTTAGTAATTCACAACAAAGGAACATTAGGAAAGTACTAACAGAGGAGAGTGAAATGATCACAGACCTGGTGAATCAAGTCAAAGAACTGAAACTGCAAGTTGGATTATAA

Transcript

ANN26268-RA

Protein

Uniprot

Uniprot term	Description
A2CEI4	Nucleoporin 88 OS=Danio rerio OX=7955 GN=nup88 PE=1 SV=1
Q99567	Nuclear pore complex protein Nup88 OS=Homo sapiens OX=9606 GN=NUP88 PE=1 SV=2
O08658	Nuclear pore complex protein Nup88 OS=Rattus norvegicus OX=10116 GN=Nup88 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10168	Nup88	Nuclear pore component	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019321	Family	Nucleoporin Nup88	Interproscan
IPR037700	Family	Nucleoporin NUP88/NUP82	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13257	NUCLEOPORIN NUP84-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000055	Biological Process	ribosomal large subunit export from nucleus	Interproscan
GO:0000056	Biological Process	ribosomal small subunit export from nucleus	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0006913	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14318	NUP88; nuclear pore complex protein Nup88	-	Messenger RNA biogenesis	ko03019	deepkoala