Genomic Location: Scaffold_217__1_contigs__length_143839:65291...72398
NR annotation: YP_009973392.1, RNA polymerase beta'' subunit [Halophila beccarii]
| CDS | |||||
| ANN26309-RA | |||||
| Transcript |
| ANN26309-RA |
| Protein |
| ANN26309-RA |
| Uniprot term | Description |
|---|---|
| Q0G9M9 | DNA-directed RNA polymerase subunit beta'' OS=Liriodendron tulipifera OX=3415 GN=rpoC2 PE=3 SV=1 |
| Q06H07 | DNA-directed RNA polymerase subunit beta'' OS=Drimys granadensis OX=224735 GN=rpoC2 PE=3 SV=1 |
| Q7YJY0 | DNA-directed RNA polymerase subunit beta'' OS=Calycanthus floridus var. glaucus OX=212734 GN=rpoC2 PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05000 | RNA_pol_Rpb1_4 | RNA polymerase Rpb1, domain 4 | Domain | Interproscan |
| PF04998 | RNA_pol_Rpb1_5 | RNA polymerase Rpb1, domain 5 | Domain | Interproscan |
| PF04983 | RNA_pol_Rpb1_3 | RNA polymerase Rpb1, domain 3 | Domain | Interproscan |
| PF04997 | RNA_pol_Rpb1_1 | RNA polymerase Rpb1, domain 1 | Domain | Interproscan |
| PF00623 | RNA_pol_Rpb1_2 | RNA polymerase Rpb1, domain 2 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007083 | Domain | RNA polymerase Rpb1, domain 4 | Interproscan |
| IPR007081 | Domain | RNA polymerase Rpb1, domain 5 | Interproscan |
| IPR007066 | Domain | RNA polymerase Rpb1, domain 3 | Interproscan |
| IPR007080 | Domain | RNA polymerase Rpb1, domain 1 | Interproscan |
| IPR012756 | Family | DNA-directed RNA polymerase, subunit beta'' | Interproscan |
| IPR038120 | Homologous_superfamily | RNA polymerase Rpb1, funnel domain superfamily | Interproscan |
| IPR006592 | Domain | RNA polymerase, N-terminal | Interproscan |
| IPR000722 | Domain | RNA polymerase, alpha subunit | Interproscan |
| IPR042102 | Homologous_superfamily | RNA polymerase Rpb1, domain 3 superfamily | Interproscan |
| IPR050254 | Family | DNA-directed RNA polymerase beta' chain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR48355 | DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA' | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003899 | Molecular Function | DNA-directed 5'-3' RNA polymerase activity | Interproscan |
| GO:0006351 | Biological Process | DNA-templated transcription | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K03046 | rpoC; DNA-directed RNA polymerase subunit beta' | EC:2.7.7.6 | DNA repair and recombination proteins | ko03400 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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