Gene detail

Detailed information of ANN26314-RA in Montipora grisea

Genomic Location: Scaffold_217__1_contigs__length_143839:90902...92511
NR annotation: YP_009973431.1, RNA polymerase alpha subunit [Halophila beccarii]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q5QA74	DNA-directed RNA polymerase subunit alpha OS=Acorus gramineus OX=55184 GN=rpoA PE=3 SV=1
Q3V502	DNA-directed RNA polymerase subunit alpha OS=Acorus calamus OX=4465 GN=rpoA PE=3 SV=1
Q0G9I7	DNA-directed RNA polymerase subunit alpha OS=Liriodendron tulipifera OX=3415 GN=rpoA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00411	Ribosomal_S11	Ribosomal protein S11	Family	Interproscan
PF01193	RNA_pol_L	RNA polymerase Rpb3/Rpb11 dimerisation domain	Domain	Interproscan
PF03118	RNA_pol_A_CTD	Bacterial RNA polymerase, alpha chain C terminal domain	Domain	Interproscan
PF01000	RNA_pol_A_bac	RNA polymerase Rpb3/RpoA insert domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001971	Family	Small ribosomal subunit protein uS11	Interproscan
IPR036603	Homologous_superfamily	RNA polymerase, RBP11-like subunit	Interproscan
IPR036967	Homologous_superfamily	Small ribosomal subunit protein uS11 superfamily	Interproscan
IPR011263	Domain	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	Interproscan
IPR011260	Domain	RNA polymerase, alpha subunit, C-terminal	Interproscan
IPR011262	Domain	DNA-directed RNA polymerase, insert domain	Interproscan
IPR011773	Family	DNA-directed RNA polymerase, alpha subunit	Interproscan
IPR036643	Homologous_superfamily	DNA-directed RNA polymerase, insert domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32108	DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan