Genomic Location: Scaffold_52__1_contigs__length_458089:172922...173826
NR annotation: RKU28901.1, phosphoribosylaminoimidazolesuccinocarboxamide synthase [Candidatus Poribacteria bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN26331-RA |
| Transcript |
| ANN26331-RA |
| Protein |
| ANN26331-RA |
| UniProt accession | Description |
|---|---|
| A8ZVI6 | Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Desulfosudis oleivorans (strain DSM 6200 / JCM 39069 / Hxd3) OX=96561 GN=purC PE=3 SV=1 |
| B8FI50 | Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Desulfatibacillum aliphaticivorans OX=218208 GN=purC PE=3 SV=1 |
| B9M5S1 | Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Geotalea daltonii (strain DSM 22248 / JCM 15807 / FRC-32) OX=316067 GN=purC PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0014471 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01259 all species → | SAICAR_synt | SAICAR synthetase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR018236 all species → | Conserved_site | SAICAR synthetase, conserved site | Interproscan |
| IPR028923 all species → | Domain | SAICAR synthetase/ADE2, N-terminal | Interproscan |
| IPR001636 all species → | Family | Phosphoribosylaminoimidazole-succinocarboxamide synthase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43700 all species → | PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004639 all species → | Molecular Function | phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | Interproscan |
| GO:0006164 all species → | Biological Process | purine nucleotide biosynthetic process | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006189 all species → | Biological Process | 'de novo' IMP biosynthetic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01923 | purC; phosphoribosylaminoimidazole-succinocarboxamide synthase | EC:6.3.2.6 | Purine metabolism | ko00230 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
