Gene detail

Detailed information of ANN26393-RA in Leptoseris scabra

Genomic Location: Scaffold_2__1_contigs__length_39127999:38558454...38568824
NR annotation: CAB3980395.1, Transposon TX1 uncharacterized 149 kDa [Paramuricea clavata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN26393-RA

ATGATCTCGTCTGGTGGATCTATACAGATTAGAGGTGTGGATGTTGATTTCCCTTTCCCGCCCTATGACTGTCAAGTTTCTTACATGGAAAAAGTGATCCAGTGTTTGCAAGAGAGGAAAAATGGTATTCTTGAGAGTCCAACTGGTACAGGGAAAACTCTGTGCTTGTTATGTGCAACATTAGCATGGCGAGAAACATATGTAGCCCAATTACAGCTTAACCAGAGGCTAAGTACTGATCAGAGTGGATCAAATTTTGTGCAAACACTGGGTGAGGAACTACAACAAGCTGCTAAAGGAGACTCCTGGGGTGCGGCAGATAGTGACAAAGCATCATTTTTTGAGGTTCCAAAAATTCTGTATGCATCAAGAACACACTCACAACTCTCACAAGCTGTGCAAGAACTTAAAAACACCATCTACAGGCCAAAAGTCAGCATCATTGGGTCCCGTGAACAACTTTGTATTAACAGTGAAGTACTCAAACAGGAAACTAATTCCGCAAAGGTGCACATGTGCAGAGCTAAAGTCCAGGCAAGAACTTGTCATTTTCACAACAATTTGGAAGCCAACAAGGCCAACAAAGACTTCACTCAAGGTATCCTTGACATTGAAGACTTAGTGGAACGTGGAAACAAGCACAGTTCCAATGATCGTCCCATTTCACTTTTCGGCCAAAAGTCCCAGAGAGAAGCGATCATGGAAGGATATAATGAAATCACTGGTCTCGAAGCGAATGAAAATGACGGATTGTCACAGTTTGTATGCCGGTCTTGTGCTCGGAAAATTGCGACATTTAAAGAATTCAGAACTCTCTGCAAAGAGTCCGATGGTAAACAGAGGACCTACCATTCAGAATCAGCGAATATACGCATAAAGAGGGAGAAGAAGCTTGAAGAAAGCCCATCAGGTCCGACGGTATCGCCTTCGGTAGGACACGCAAGCAAGAAAACCCGACCAGACCATGTAGCAAAGCCACCTGTCAAGATTCGCCTGGCTTGCCGGTTTCAGTCGGCGAGCTCTTCCACTCCTGGTCTTACGCCTATAGCGCCCAAACCTACGTGCAACGAGAAGGAGCGTCAAGAGTCAACTGATGCCATACGAAATTTGCCAGAATTTCTGAAACCTAAAGTTGTGGACAAGGCTGGCGTAGACAGAAAACAAGGAGTTGATATTCTCTCTAGCTCTGGACTCCACAAGAACACGGTTGCTGAGCCTCCTAATGCAGGGACCATTGGGGTGCTTACACCAGATGAAAAAGAAAAACTGGTTGCAAAGATAATGTCATCATCACCTCCAGCTCTGGCAGAAACCATGATGAAAATACCACTTATTAAGAGTTGCGTGAAAGCTATCATACTGCAAGATATTGATAGTCAGTGCCAAAAGCTGTGTCAGAAGAAAGAAAATCCATCTGTTCTTCGAATGACAAAGGACAGTCAAAAGGAACTAAACAAATTTCAATGGATCTCTATTCTGACTGAAATGAAGGAAAAAGCCCCTGATGTACTGGACATGTTGTCAGCTGTGGCATTACCTAATGTGAAAGCAGATGGCAGCCAGGTACCAAGGATATGTACTGCATATGGTGTGCTTATGAATACCAGAAACAGGGAGCTGTCCCTAGTACAGAAAGTCAACGCAGTTGTCCTTGGTTCTGGTCATGCATCTAAGAAGACATTTCAGAGATTGAATAAGACTGGTGTCACACAGAGCAGGGACAGTTTACTAAACATCATGGACAGCGTTGGTGGTGACATCATATCAGAAGTTAAGCAAGTGCTTCAAACCAACAGCAGCCTTCGCATTGTATTTGATAATCTAGACTTTATTGTCCTTGTCAACATCATATTAAAGAACCACAGAAATTCAGATATGCACTGGATAGGGCACTATGTCACATTTGATAGGATCCCATCTAGCCATCTTGACAACACTCGTCCACTTGTGGCGGACATCAACAAGTTCAATAACACTGAGTACCTACTTAGTGAGGATGAGCTGTGGAAGTTGAAGAGCGACTTCACGGTATTGGTAGCGAGGGTTCTGGTTCAGTTCTTCACTTGTCTGAAGCATCTAAAAAGTGCTGTTAACATCCACATACCACACAGGTATTCCAAAGAGATGGCAAAGAAGTCTACTATAATTGGTCTCCCAATTGTCCCTTACAACCAGAACAAACATGCAGATGTTGTCCAGTACCTGGAATATGTTGAGGATTTCCTAATGAAAGTGTACACTCCTGATGATGAACCCCGTGTGCCACCTGGGACCTCTGCTGAGGAAGAATCTGCCAGAAGGGAAAGAGTACTAAAAAATGTGAATGTGCCCCTATGCGGTGACCTACTGGGACGAGAACGAGTGACAGGTGCTAAGAAGACAAGAATGGGGTGTGACCTACACACTGAGCGTTTTGACAACATTACAGAGAATGCCACCTTGTGGCATGCAAAGCAGTCATTTCTTGGGTACATCTGGGAGCAGCTGTACAAGCCTGATGCCATATCAGGAAGAGAGCCAGGCACACTTTACCATTTGCGGCAACAGTGGCATATGAGCAATGTGTACAGCAAAGTGAAACAGAACTACCAAAGTGCTGAGAACCTTATGCTGTGTGCTACTAAGGCATACTTGTGCTGTGCGTTTATGAGTTGGGCAGGTCTAGATAGCCTTGATGGCTTAACACCCACTAAGATAAAACTCTTAGATGAGAAGGCCAGAGATGAAGAGAAGACAAAGTTTATTGAGGAGATCATTGGCAAGTTTGTAGAAGAGTTTGCTTTTGTGGAATTTGACATTGAGAAAGCCTGGAGAGAGCAGCATGAACAGAGAAATAGTCCTGCTGACCAACAAGCAACTGCCACTTCTGCTTCGACTGAGACTCCAAACTTGGCACCAGTGGTTATAATGGTACAACCAAAGCTACCAAATGGCTATGAGGTCCTTGGAGTTGGGCAAGTTGCTGGGGCTGAAGGTCTACAAACTGGGCAGACTGTTCCTGTGCTTGTGGCAGCTGTTGAAGAAATTGCAGCAGGGATAATCAGCATTGGGCAGGTAGTCCTGTGGCCAAGAGAACATCTGGCAATCCCACGAGCAAGACAGGAAGAAACCTCTAGTGAACAGAACACACCCGAGCTACCTTCACCGATGTCTGATATTCCACCTGACACCGATGACAGGGTAATGAATTATGCATTACAATGCATACAGCTAGGTGTCATGCTGATGCAGCTCAATGACACAGAGAAAGAGGGTGATGGAGAAAGAAGTCTCATCAACTGGAAGCTGCTCATGCTGTACTTTAGATCAAGGAAGCATGGTATGAAATATGCATATGAAGCAATGAGGCTGATTACTTGTGTTAAGGGTCTCTACACTGAACAAATGGCACACCGGATAACTCATGGTCAGTTTGTCAATGCGAAGGGGGGTGCTGGAAATAACTGTGCTAATGACCTCAGGATGGAAATGCTTATTAAGCACTACAAGGTCATTTTGAAAGGCATGTGTGGCAACAAGACCCTAAAGGCTGTGGAACGAAGCAGTGCTGCTGCATATGGTTTGAACAAGATAGTCCAGAGTTATGACATAACCAGTGACATTCCTCCAGATTCAACATCACATACCCACACCAGCACAGTACAGGACATTGAGGAGATGATTACACTCTTTCACAACATAGCACCTTTTAGTAATCAGCCTGGCAGAGCTCACCGGTCATTCCCAACCATTAGCAAGAGTCCACTGGACCAACTTGATGTAGCCCTACTGCATTCCTGGCTCACAAGGCACAAGAGACGGTTAGCAAATAACTATCATGCCAATTGTGATGATGCCAGTACAGAGGATGATGAAGAACTAATCGAAGATGCTAGTGACTATGAGATAGAAAGTGCAAATGAGGATAACATGTGA

Transcript

ANN26393-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0C928	Regulator of telomere elongation helicase 1 OS=Danio rerio OX=7955 GN=rtel1 PE=3 SV=1
A4K436	Regulator of telomere elongation helicase 1 OS=Bos taurus OX=9913 GN=RTEL1 PE=2 SV=1
Q9NZ71	Regulator of telomere elongation helicase 1 OS=Homo sapiens OX=9606 GN=RTEL1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000400 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07776 all species →	zf-AD	Zinc-finger associated domain (zf-AD)	Domain	Interproscan
PF20231 all species →	DUF6589	Family of unknown function (DUF6589)	Family	Interproscan
PF06733 all species →	DEAD_2	DEAD_2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012934 all species →	Domain	Zinc finger, AD-type	Interproscan
IPR045028 all species →	Family	Helicase superfamily 1/2, DinG/Rad3-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR046496 all species →	Domain	Domain of unknown function DUF6589	Interproscan
IPR010614 all species →	Domain	RAD3-like helicase, DEAD	Interproscan
IPR006554 all species →	Domain	Helicase-like, DEXD box c2 type	Interproscan
IPR014013 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11472 all species →	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0010569 all species →	Biological Process	regulation of double-strand break repair via homologous recombination	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0045910 all species →	Biological Process	negative regulation of DNA recombination	Interproscan
GO:0070182 all species →	Molecular Function	DNA polymerase binding	Interproscan
GO:0090657 all species →	Biological Process	telomeric loop disassembly	Interproscan
GO:1904430 all species →	Biological Process	negative regulation of t-circle formation	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0016818 all species →	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN26393-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.