Gene detail

Detailed information of ANN26457-RA in Leptoseris scabra

Genomic Location: Scaffold_13__1_contigs__length_39802057:1228919...1231311
NR annotation: XP_022804186.1, zinc finger BED domain-containing protein 1-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN26457-RA

ATGTGCGTGCTCATTGTCACGTTCTCAAACATGGCGACGAATGAGCAAGCGATTGTGGATCCGCCTGCTTCTTTTCGATCCGCAGTGTGGAAATATTATGGTTTTCCGACTAAAGACGGAACAACAGACAAGTCTAAAACTATCTGCAAAATTTGCTTCGCAACTTTCAAGTATTGTGCCGGTTCGACCTCGAGCATGAGCGCGCACTTAAAAAGTCAACACAGCATTGATGAAAAGACGGAAGTGTTGCAGTCAAAGACGGCGAGTACCAAAAACAGTACTGCACCTGGACAGTCAAAAATTCAGGATGTTCTGAAAAATAAGTTGCCGCGGTCGGGCAACAGAGCAACGGCAATAACGACGTCCATTGGAGTTTTCATTGCAAAGGACATGAGGCCCTATTCAGTTGTGGAAAATAAAGGGTTTCAACACATGATCAACGTTCTGGAGCCTAGGTATGACTTACCAAGCAGAGTTCATTTTTCTGAGAAGGTGATACCTAAACTTTACGAAGAAGTCAAAGCAGAAGTCGAATCAGGCCTTAAAAGTGCCGAGTTCGTGGCTTTAACAAGTGATGGATGGACATCTAGATCAACCGAAAGCTACATAACAGTTACCGCACATTTCATCCAAGAATGGAACATTAAAAACTATGTTTTGCAAACAAGAAGAATGGATGAGTCACATACATCAGAAAACTTATCAAAAATACTGACTTCAGCTATATCTGAGTGGAATTTACAAAGATATGAACAGAATCCATCTCTGACATCTGACAACTTCTTCTTTTACTATTATTATTTACTTTTAACTTATCAAGCTGAACTTTCACCACATGTTGGATGTGTGGCCCATACAATCAATCTGGCAACCCAAAAAGGACTTAAGGTATCTCAAATGGACAGGCTTCTTGGAAGGATAAGGCGCATAGCAAGCTTTTTCCACAGGAGTACAACAGCTATGGCAGTTTTGAAATCAAAACAAGCTTTATTGGAATTGCCGCAACACAAGTTGATAAATGATGTACCAACTAGGTGGAACTCCTCATATGACATGGTGCAGCGGTTTTTAGAGCAACAGGCAGCAATTGAAGCTGTCCTCTTGACAAAAGATGTCAAGAAAAATGCCAAAGATGTTCATTTTTTGTCAGAAAATGACATCTCTGCAGCAGAGAGTGTCATCAAAGTACTGGGACCAATCAAGACTATTACTACTATCCTTTGTGATGAGAAGACGCCTACAGTATCCATGATTCACCCTCTGAAGGAAATGCTGATTCAGCAGTTGAAAGTTTCAGATGATGACATTATGCTTGTTAAAGAAGTGAAAACAGCTATAGCAAAGGATTTGGATGCTAGATATACAGACCTTGACACATTGCAGTTTCTGAAGGAGAGTTCCTGTTTAGATCCAAGGTTTAGATCCATGCCATATCTTGATGAAACCGAGAAACTAGATGTCTACACTGCACTTACCTTGAAAGCAGTCTCACTGAATGAGCAACAACAAAATTCAGTTCAGGTGAAGACTGAAGCAGACCAGCCTAGTGTGCAGGGACAGCCACAGCTGCCCAATTTGCCAAGTCTACCAACTCTGGAGGGTGAACATTCAAATTCCAGTGGGGAGACAACTTTTGTCCTCACAAGTGATCCCCCACCAGAAAAGAAAAGGAAATCTGCCTTGGATGATCTCTTTGGAGATGTTTTTATAACTAAAGTTCGTCCTGGGAAGTCAGTGTTGCAGTTAGTTGAGTCAGAGTTGGCTAATTACAAAGTTGAAGAAACCATGCCTTTGAACTCTAATCCATTGTTGTGGTGGGAAGCAAATGAGCTGAAATATCCCATTTTGTCAAAGTTGGCCAAAAAATATCTATGTGTCCCTGCCACATCAGTGGCCAGTGAGAGAGTTTTCTCTTCTGCAGGGGACATTGTGTCTTCTCAGAGGTCATGTTTGCATAGTGACCATGTGGACAAGTTACTTTTTTTAAAGAAAAATATGAGAGTGCACTAG

Transcript

ANN26457-RA

Protein

Uniprot

Uniprot term	Description
O75132	Zinc finger BED domain-containing protein 4 OS=Homo sapiens OX=9606 GN=ZBED4 PE=1 SV=2
Q80WQ9	Zinc finger BED domain-containing protein 4 OS=Mus musculus OX=10090 GN=Zbed4 PE=2 SV=1
B8MV65	Putative transcriptional regulator tpeD OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) OX=441959 GN=TSTA_008170 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05699	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF02892	zf-BED	BED zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052035	Family	Zinc finger BED domain-containing	Interproscan
IPR003656	Domain	Zinc finger, BED-type	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR008906	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46481	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan