Gene detail

Detailed information of ANN26463-RA in Montipora grisea

Genomic Location: Scaffold_1769__1_contigs__length_50098:26270...28343
NR annotation: CAE7405154.1, sucA [Symbiodinium microadriaticum]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN26463-RA

ATGAATATCCACGAGTATCAGGCAAAGAGCCTGCTTTCCAAATTTGGTGTGCCGGCACCGCAGGGCCACGTCGCCTATACGCCCGATGAAGCGGAGAACGCGGCGCGTGAGCTGGGCGGTCCGATCTGGGTGGTGAAATCTCAGATCCACGCTGGCGGGCGCGGCAAAGGAAGGTTCAAGGACGATCCGGACGGCGAGGGCGGTGTGCGGGTCTGTAAATCCCTCGATGAGGTGCGCGAAAACGCGCGCAAGATGCTGGGTCATGTGCTGGTCACTAAGCAAACCGGTGGAGACGGCAAGGAGGTCAAAAGACTCTATATCGAAGATGGCTGCGATATTGCCCGTGAACTCTACCTCTCCATGTTGGTCGATCGGGCCTCGAGCCGGATTACGGTGGTCGCCTCCACTGAAGGCGGGATGGAAATCGAAGAAGTTGCCGCCAACACGCCAGAGAAAATTCTTAAGGAAGCGGTTGATCCGGCGGTTGGCCTGATGCCTTACCAGGCGCGCAATATCGCCTTCGGCTTGGGCCTTGAAGGCAAACAAATCAGCGCCTGTGTGAAATTTCTCTCTGGTCTCTATAAGGCCTTTACGGAACTGGACGCCTCTCTAATCGAGGTAAATCCTTTGGTGGTCACCGGTGATGGTCAGGTCATCGCGCTCGACGCCAAGATGAATTTCGATGACAACGCGCTCTTCCGTCACAAAGACGTGGCGGACATGCGCGACGAGGATGAAGAGGACCCCATGGAGCTCGAGGCCGGGCGCCATGAACTCAACTACATCAAACTCGACGGCAACATCGGCTGCATGGTCAACGGCGCTGGCTTGGCCATGGCAACCATGGACATCATCAAGCTTCATGGCGGCGACCCGGCGAACTTCCTGGATGTCGGCGGTGGTGCGACCAAGGAACGCGTCACCGCGGCCTTCAAGATCATCCTGTCCGATCCCAATGTCGAAGGCATCCTGGTCAATATCTTCGGCGGCATCATGCGCTGCGATGTCATCGCCGAAGGCGTGGTCGCGGCCGCAAAGGAGGTCAGTCTCCATGTGCCGCTTGTGGTGCGCTTGGAAGGCACCAATGTCGAGCAAGGCAAAAAAATCTTGGCCGAATCAGGGCTGCCGATCACCTCGGCAGACGATCTCGGCGATGCCGCGCAGAAAATCGTGGCCGCGGGCTTCACAGGCGCCCAGGGCACCTTCCATTCCGAGCAGGCGATCGCCTATGGCACGCAGTTGGTGGGCGGTGTGACTCCGGGCAAGGGAGGCACCACGCACTTGGACTTGCCGGTTTTCGACACCGTCGCCGACGCTGTCGGAGGCACGGGCGCCAATGCCTCGGTGATCTATGTGCCGCCGCCCTTTGCCGGCGATGCAATTCTCGAGGCCATCGACGCGGGGGTCGAGCTGGTGGTGTGCATCACCGAAGGCATCCCCGTGCTTGACATGGTCAAGGTCAAGCGCGTGCTGTCCACCTCCGGCACTCGGCTGATCGGCCCGAACTGTCCAGGCATCATCACGCCTGACGAATGCAAGATCGGTATCATGCCGGGCCATATTCACAAGCGTGGAAAGATCGGCGTGGTCTCGCGTTCCGGCACCTTAACCTATGAAGCGGTGGCACAGACCACGGCCAATGGCCTGGGTCAGACGACTTGCATCGGGATCGGCGGCGACCCAGTGAACGGCACCAACTTTGTTGACTGTCTGGAACTCTTTATGGACGACGACGAGACGGAAGGGATCGTCATGATCGGTGAGATCGGCGGCGATGCCGAGGTCAAGGCGGCGGAGTACGTGAAGTCCACGGGTAATAAGAAGCCGGTTTGCGGTTTCATCGCAGGTAAGACCGCGCCTCCGGGCCGGCGCATGGGCCATGCGGGCGCGGTGATCTCCGGTGGCAAGGACACGGCAGATCATAAGATCGAGGCTTTGAAAGACTGTGGTATCGCCGTTGCGGAATCGCCGGCGACCCTCGGTCAGACCATGCTGGAGGCGATGGGCGGATGA

Transcript

ANN26463-RA

Protein

Uniprot

Uniprot term	Description
Q2W063	Succinate--CoA ligase [ADP-forming] subunit beta OS=Paramagnetospirillum magneticum (strain ATCC 700264 / AMB-1) OX=342108 GN=sucC PE=3 SV=1
B6IP72	Succinate--CoA ligase [ADP-forming] subunit beta OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=sucC PE=3 SV=1
Q2RV33	Succinate--CoA ligase [ADP-forming] subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=sucC PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00549	Ligase_CoA	CoA-ligase	Domain	Interproscan
PF08442	ATP-grasp_2	ATP-grasp domain	Domain	Interproscan
PF02629	CoA_binding	CoA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011761	Domain	ATP-grasp fold	Interproscan
IPR005809	Family	Succinate--CoA ligase-like, beta subunit	Interproscan
IPR016102	Homologous_superfamily	Succinyl-CoA synthetase-like	Interproscan
IPR005811	Domain	ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain	Interproscan
IPR017440	Active_site	ATP-citrate lyase/succinyl-CoA ligase, active site	Interproscan
IPR013815	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR013650	Domain	ATP-grasp fold, succinyl-CoA synthetase-type	Interproscan
IPR017866	Conserved_site	Succinyl-CoA synthetase, beta subunit, conserved site	Interproscan
IPR005810	Family	Succinyl-CoA ligase, alpha subunit	Interproscan
IPR033847	Conserved_site	ATP-citrate lyase/succinyl-CoA ligase, conserved site	Interproscan
IPR003781	Domain	CoA-binding	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11815	SUCCINYL-COA SYNTHETASE BETA CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004775	Molecular Function	succinate-CoA ligase (ADP-forming) activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006104	Biological Process	succinyl-CoA metabolic process	Interproscan
GO:0042709	Cellular Component	succinate-CoA ligase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01902	sucD; succinyl-CoA synthetase alpha subunit	EC:6.2.1.5	Carbon fixation pathways in prokaryotes	ko00720	deepkoala