Genomic Location: Scaffold_1076__1_contigs__length_63125:45774...46818
NR annotation: NIP30695.1, 30S ribosomal protein S3 [Candidatus Dadabacteria bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN26515-RA |
| Transcript |
| ANN26515-RA |
| Protein |
| ANN26515-RA |
| UniProt accession | Description |
|---|---|
| B8FES9 | Small ribosomal subunit protein uS3 OS=Desulfatibacillum aliphaticivorans OX=218208 GN=rpsC PE=3 SV=1 |
| A1ALU7 | Small ribosomal subunit protein uS3 OS=Pelobacter propionicus (strain DSM 2379 / NBRC 103807 / OttBd1) OX=338966 GN=rpsC PE=3 SV=1 |
| A5GAX1 | Small ribosomal subunit protein uS3 OS=Geotalea uraniireducens (strain Rf4) OX=351605 GN=rpsC PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0019645 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00237 all species → | Ribosomal_L22 | Ribosomal protein L22p/L17e | Domain | Interproscan |
| PF00189 all species → | Ribosomal_S3_C | Ribosomal protein S3, C-terminal domain | Domain | Interproscan |
| PF07650 all species → | KH_2 | KH domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001063 all species → | Family | Large ribosomal subunit protein uL22 | Interproscan |
| IPR036394 all species → | Homologous_superfamily | Ribosomal protein uL22 superfamily | Interproscan |
| IPR015946 all species → | Homologous_superfamily | K homology domain-like, alpha/beta | Interproscan |
| IPR001351 all species → | Domain | Small ribosomal subunit protein uS3, C-terminal | Interproscan |
| IPR005727 all species → | Family | Large ribosomal subunit protein uL22, bacterial/chloroplast-type | Interproscan |
| IPR004044 all species → | Domain | K Homology domain, type 2 | Interproscan |
| IPR005704 all species → | Family | Small ribosomal subunit protein uS3, bacterial-type | Interproscan |
| IPR036419 all species → | Homologous_superfamily | Ribosomal protein S3, C-terminal domain superfamily | Interproscan |
| IPR009019 all species → | Homologous_superfamily | K homology domain superfamily, prokaryotic type | Interproscan |
| IPR004087 all species → | Domain | K Homology domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11760 all species → | 30S/40S RIBOSOMAL PROTEIN S3 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0015934 all species → | Cellular Component | large ribosomal subunit | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0022627 all species → | Cellular Component | cytosolic small ribosomal subunit | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02982 | RP-S3, rpsC; small subunit ribosomal protein S3 | - | Ribosome | ko03011 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
