Gene detail

Detailed information of ANN26603-RA in Leptoseris scabra

Genomic Location: Scaffold_13__1_contigs__length_39802057:4306183...4317877
NR annotation: CAH3183402.1, unnamed protein product, partial [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN26603-RA

ATGACTATGACTTTAAAGCTGGTCTATTTGCTCGCGGGACTTTATCTCCTTTTCCATATACCAAGAAGTCAACAAGATGTTCCAGAACCTGTTGTCTTTTTCCCGTTGAATGTGACTTATGGAACCAGGGAAATCCAAGACCGAGTACCCCAAGGCAACTCCATTGGAGTTCAGTTGGCTGCAGGACCCGACGGACGATTGAACGGCTCTTATGAATTTTTTGGTAACGCAAATAGCTACATCCAGTTCAACAACAGCGACGGAGGAGTTTTGGACGTGCGTTACTCAATCACGATGCTATGCTGGGTGTACAATGATGGCCAGGACGGACCGTTTTTCTCTTACAGCCCATGGCCAAGCCGTTCTCCACAACCGTTGTTTTTTGGTGTATCGACTGCGAAACTTTATGTTGTATTTGTGGCCCGTGGTGATAGATATTTTTCAATCCTTAAAACCGGTAGTCTAGCCGGTGGGTGGAAGTTTGTTGGTGCCTCCTACAATAGAACCACTGGGGAAGCCAAACTGTGGATCGATGGCGTCGCAGTTCAAACAAAAAATGCCGCAGCCGAAAAAGATCTGGAAACGAAGCATAACGTCGTAATGGGAGTTGCGCCAATTTACAGTTCCTTCTTCAAAGGCAGGATAACCCAAATGAGACTTTACAACATATCTCTGTCACAGGAACAAGTACGCGAAATAATGGGGTTTTTACTCCGCCCACAGAAAACCAAAACCAAAAAGGCCCGGCTGGAGTTAGAGGAGGTAGGATTGGGGATATATAAGAGAAGGAAAGTTCGTGGATACTGGGTACTGCAACTCCACTCAAGATTCCCCAACACTGAGAATAAGTTGAATCGAGAAATGAAGAGGTCATACATATTTCATATGGGCCCCTGGTGCAATGTTTTGGAGTGTTATAGTCCCGGACTTCAACAAAGTAGTTTATTACAATCCATGTTTGCTTGCTATCAGGTGATAGTGATGACTGTGCTGTTCAACCGTGCCAAAATGGAGGGAATTGCACAGACGCTGTATTTGATTATGCTTGCAATTGTGCTGCTGGCTACAGTGGAAAGAGTTGCAGTTTTGGTAAGGATGATGTGTAAAGATTTATTTAAGAGAAAAGAACATTTTGGGGTTAGGTGCACTTTAATGAAAAAACATGTTTGCTTGCTGTCAGATATTGACGAATGTGCCGTTCGACCGTGCCAAAATGGAGGAAATTGTACAGACGCTGTAAATGATTATGATTGCAACTGTGCTGCTGGCTATAGTGGAAAGAGTTGTACCATTGATATTGATGACTGTGCTGATCAACCGTGCCGGAATGGAGGAAACTGCACTGACGCTGTAAATGATTATACTTGCAACTGTGTTGCTGGTTATAATGGAAAGAATTGTAGCGTCGATATTGATGACTGTGCTGATCAGCCTTGCCAAAATGGAGGAAACTGCACAGACGCTGTAAATGATTATACTTGCAACTGTGTTGCGGGTTATAGTGGAAAGAATTGTAGCGTCGATATTGATGACTGTGCCGTTCAACCGTGTCAAAATGGAGGAAATTGCACTGACGCTGTAAATGGTTATACTTGCAACTGTGTTAATGGTTACAGTGGAAAGAATTGTAGCGTCGATATTGATGACTGTGCTGATCAGCCCTGCCAAAATGGAGGAAACTGCACTGACGCTGTAAATGATTATTCTTGCAACTGTGTTGCTGGTTACAGTGGAAAGAATTGTAGCGTCGATATTGATGACTGTGCTGATCAGCCGTGCCAGAATGGAGGAAATTGCACTGACGCTGTAAATGGTTATACTTGCAACTGTGCTGCTGGTTATACTGGAAGGAATTGTAGCGTCGATATTGATGACTGTGCTGATCAGCCGTGCCAAAATGGAGGAAATTGCTCTGACGCTGTAAATGATTATACTTGCAACTGCGTTGCTGGTTATACTGGAAAGAATTGTAGCGTCGATATTGATGACTGTGCCGTTCAACCGTGCCTGAATGGAGGAAATTGCACAGACGCTGTAAATGATTATACTTGCAACTGTGTTGCTGGTTATACTGGAAGGAATTGTAGCGTCGACATCGACGACTGTGTCGAGAATCCTTGTCAAAATGGCGGCCGTTGTACGGATGCGGTGAATGATTTCAACTGCGCCTGTCCTCAAGGCTTCTCGGGGAAAAACTGTAGCATTGGTAGGTGTTAA

Transcript

ANN26603-RA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF13385	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12916	CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005112	Molecular Function	Notch binding	Interproscan
GO:0007219	Biological Process	Notch signaling pathway	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan