Gene detail

Detailed information of ANN26613-RA in Montipora grisea

Genomic Location: Scaffold_199__1_contigs__length_152307:44618...46221
NR annotation: WP_089372881.1, pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [Dokdonia pacifica]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R9N5	Pyruvate dehydrogenase E1 component subunit alpha OS=Rhizobium meliloti (strain 1021) OX=266834 GN=pdhA PE=3 SV=1
Q1RJX4	Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=pdhA PE=3 SV=1
Q4UKQ6	Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=pdhA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004452 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00383 all species →	dCMP_cyt_deam_1	Cytidine and deoxycytidylate deaminase zinc-binding region	Domain	Interproscan
PF00676 all species →	E1_dh	Dehydrogenase E1 component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050642 all species →	Family	Pyruvate Dehydrogenase E1 Alpha Subunit	Interproscan
IPR002125 all species →	Domain	Cytidine and deoxycytidylate deaminase domain	Interproscan
IPR001017 all species →	Domain	Dehydrogenase, E1 component	Interproscan
IPR017597 all species →	Family	Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y	Interproscan
IPR016192 all species →	Binding_site	APOBEC/CMP deaminase, zinc-binding	Interproscan
IPR016193 all species →	Homologous_superfamily	Cytidine deaminase-like	Interproscan
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11516 all species →	PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004739 all species →	Molecular Function	pyruvate dehydrogenase (acetyl-transferring) activity	Interproscan
GO:0006086 all species →	Biological Process	acetyl-CoA biosynthetic process from pyruvate	Interproscan
GO:0016624 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00166	BCKDHA, bkdA1; 2-oxoisovalerate dehydrogenase E1 component subunit alpha	EC:1.2.4.4	Lipoic acid metabolism	ko00785	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.