Gene detail

Detailed information of ANN26648-RA in Montipora grisea

Genomic Location: Scaffold_130__1_contigs__length_204513:122746...124832
NR annotation: KAG1700502.1, putative malate--CoA ligase subunit beta [Nymphon striatum]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN26648-RA

ATGGACATTCACGAGTATCAAGCCAAGGAAATCCTTGCCGAATTCGGCGTGGCCATCCCCCGGGGCGGCCTGGCCTATTCGCCCGAGCAAGCCGCCTATCGCGCCCGCGAGCTGGGCGGCGAGCGCTGGGTGGTCAAGGCTCAGATCCATTCCGGCGGCCGGGGTAAGGCAGGCGGCGTGGCGCTGTGCGAAACCGACGAGGAAATCCAGAACGCGGCTTCGGACATGCTGGGCGCGCGCCTGGTGACCGCCCAGACCGGCGAGCGCGGCAAGATCGTCTACCGGTTGTATGTCGAAGAGGCGATGGCCATCGAGGAAGAGATCTATCTGGGCTTCGTGCTGGACCGGACCTCGCAGCGGATCATGATCGTCGCCTCGCGCGAGGGCGGCATGGAGATCGAGGAAATCTCGGCTCAGCGGCCCGAATCGATTGTGCGTGCGACGGTCGACCCGGCGGTCGGGCTGGTCGATTATCAGGCCCGCGAGCTTGCCTTTAAGCTGGGGCTCGAGCCGGGCCTGGTCCAGCAATTCGTGGCAACTCTGCAAGGCTGTCATCAGGCGTTCACGGACTATGACGCGACCATGGTCGAGATCAATCCGCTGATCATCACCCAGGACAAGCATGTCGTGGCGCTGGATGCCAAGATGACCTTCGACGACAATGCCTTGTTCCGGCATCCGCGCATCGCCGAGTTGCGCGACAAAAGCCAGGAAGACCCACGCGAAAGCCATGCCGCCGACCGGGGCCTGTCCTATGTCGGGCTGGATGGTACGATTGGTTGCATCGTCAATGGCGCGGGCCTGGCCATGGCCACCATGGACACGATCAAGCTGGCTGGCGGCGAGCCTGCCAATTTCCTGGATATCGGCGGGGGCGCGACGCCCGAGCGGGTCGCCAAGGCGTTCCGTCTGGTCAAGTCCGACAAGAACGTCCAGGCGATCCTGGTCAATATCTTCGCCGGTATCAACCGCTGCGACTGGGTGGCCGAAGGCGTGGTTCAGGCGCTGCGCGAAGAGCCCTTGGACATTCCCGTGATCGTCCGCCTGTCGGGCACGAATGTCGAGGAAGGCCAGCGTATCCTGGGCGAAAGCGGGTTGCCGATCATCCGGGCAACCACCCTGATCGAAGCCGCCGAACGCAAACGATATTGCGGCGAAAACCGCGCTGAGGAGCGTGTCATGAGCATTCTGATCGATAAAGACACCCGCGTCATCGTCCAGGGCGCGACCGGCAAGATGGCGCGGCTGCACATGGCCGAAATGATCGACTATGGCACCAATGTCGTCGGCGGTGTGACGCCGGGCAAGGGCGGCGATAAGATCGGCGATATCCCGGTTTTCGACACGGTGAAGGGCGCCGTCGAGGCCACTGGTGCGACCGCCAGCCTGATCTTCGTGCCGCCGCCCTTTGCCGCCGACGCGATTATGGAGGCCGCCGACGCCGGTATCTCGTACTGCACGTGTATTACCGACGGCCTGCCCGCGCAGGATATGATCCGGGTCAAACGCTTCATGCGCCGCTATCCGGTCGAGCGCAAAATGCGCCTGACCGGGCCGAATTGCGCGGGTACGATCTCGCCCGGCAAGGCGATGATGGGGATCATGCCAGGGCACATCTACAAGAAAGGCCCGGTTGGGATCGTCGGGCGGTCCGGTACGCTGGGCTACGAGGCCGCGTCGCAGTTGAAGGCGCTGGGCATCGGGGTCTCGACCTCGGTGGGCATCGGCGGCGATCCGATCAACGGCTCGTCCTTCCGCGATATCCTCGAGCTGTTTGAACAGGACGCCGAGACCGATGCGGTCTGCCTGATCGGCGAGATCGGCGGCCCGCAAGAGGCCGAGGCGGCCACGTTCATCCGCGATCACATGCGCAAGCCCGTGGTCGCCTATGTCGCGGGACTGACCGCGCCCAAGGGCCGGACGATGGGGCATGCGGGGGCGATCATCTCGGCCTTTGGCGAGAGCGCCTCCGAGAAGGTCGAGATCCTGTCCGCCGCCGGTGTGACCGTGTCCGAACATCCCAGTCAGATCGGCGAGACCGTGGCCGGCGTCCTGGCCAAAGCCGCGTAA

Transcript

ANN26648-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q98KT9	Probable malate--CoA ligase subunit beta OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=mtkA PE=3 SV=1
P53594	Malate--CoA ligase subunit beta OS=Methylorubrum extorquens (strain ATCC 14718 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1) OX=272630 GN=mtkA PE=3 SV=2
C4L610	Succinate--CoA ligase [ADP-forming] subunit beta OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) OX=360911 GN=sucC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001643 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08442 all species →	ATP-grasp_2	ATP-grasp domain	Domain	Interproscan
PF02629 all species →	CoA_binding	CoA binding domain	Domain	Interproscan
PF00549 all species →	Ligase_CoA	CoA-ligase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR005810 all species →	Family	Succinyl-CoA ligase, alpha subunit	Interproscan
IPR013650 all species →	Domain	ATP-grasp fold, succinyl-CoA synthetase-type	Interproscan
IPR003781 all species →	Domain	CoA-binding	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR017866 all species →	Conserved_site	Succinyl-CoA synthetase, beta subunit, conserved site	Interproscan
IPR016102 all species →	Homologous_superfamily	Succinyl-CoA synthetase-like	Interproscan
IPR005809 all species →	Family	Succinate--CoA ligase-like, beta subunit	Interproscan
IPR005811 all species →	Domain	ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain	Interproscan
IPR017440 all species →	Active_site	ATP-citrate lyase/succinyl-CoA ligase, active site	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11815 all species →	SUCCINYL-COA SYNTHETASE BETA CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0004775 all species →	Molecular Function	succinate-CoA ligase (ADP-forming) activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006104 all species →	Biological Process	succinyl-CoA metabolic process	Interproscan
GO:0042709 all species →	Cellular Component	succinate-CoA ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01902	sucD; succinyl-CoA synthetase alpha subunit	EC:6.2.1.5	Carbon fixation pathways in prokaryotes	ko00720	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.