Gene detail

Detailed information of ANN26670-RA in Leptoseris scabra

Genomic Location: Scaffold_13__1_contigs__length_39802057:5902535...5915427
NR annotation: CAH3105250.1, unnamed protein product [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN26670-RA

ATGGTTGCCATGGAAATAGCCGAAGTGGTCATGTCACAGGAAGAAAACATGGCGACTGCGACTTCTCAAAGACCATTGCTTCTTTTACGGCGGCCTTTGCCACCCAAACAACCGCCGCCACCCACTTCTCACCGGTCTCGAACGGAAGATAAATCCTCGGAGACGACGGATAATTACAAGGTGTCGGCAAAATCGCCTGATGTGTTAACCGTGAAGCGATTTACGAACACGAAGTCAAAAGTCGAAGAGTCGACGATGGGAGAAGTGAGATTTCACGGTGATGTCCCTCTCCCGATAACATCCGTTGTAAAGCCATACAAGCCAAAAGGTCCTGATCCTTTACCGCCAAGACCCCCGAGAAAACTAAGAGAATTACCTTTGGAAGCTTTCATAAATGATTCATACACAAGGCCGCCTCCAGAATTCACTTTAAAAGACTTCGCGAGAAGATTGCCGTCGCGCACTAAACTGGACGATGATGGCGAGCCAATGATTTCAGAGCAAAACTATGAAAAATTAACGAGCTGGTTTGCTGCAAATAAACCTCATCAATCTACAATTCATAGTCTGGAAATAGACAGTAGTGTTGATGTTCCTGATGTTACTCCACGTGTACCTGTCAGACAGCTTCTTATAGAAATGCAGTTCCAAGGAATGGATATTTTACCGTCACCGGATCAGGAATTAACTTACATTACAGATCGTTCAGCTACAGTATTTCCAGTTACACCAGCTGCCTCTAAACTGACATTACCAGCTTCACGATTTGCACCCTTGCCACCGATAGAGACCGAACATGTGTCCACTGGCGACAGGGATGCTTTGATGTCTTCCGAAAGGGATCATCATAGGGACCCTCAGTATGTTCCCATCAAAACATTTGGTGCGACTACAGAGGCAGAAACTACGGCAACATCTTGGGAAGTAGGACAGGAAAAACCTGTTGTTTCACGGAATGAGGGGATGTACACGTCAAAGGAATTAAGAGCTAGGTTTGATCAGGAGCAAGTAGTAGGGGACAGTAAAGATCAACATAGTTTATCAAGAGGAAGAAATTATGAACCTACAGACAATCAGAGAACAGCTGTGAAGGAGAGAATGCTGACCCTTGAGATTGAACCAATGGTAGCTTACCAGGGTGAGGAGGTAATTCTTCCAAGTTCACAACCAGAATACTTCCAAGGAGAGGAGTTACCAAGAACATCTTCACCATTTGTAAGTGCTGATGTCTATGATGCACAGATTTCTCCAATGGAAGCAGTGGTTTTAAATGCAATGATGACGGGATCATCAATACTAAATCTCAGGGCACACTTTCTTAGTCGACTTCCTGATCTCAGTGGACTGGCTGGAATGCTGACACACTTGAATCTCTCCTTTAATGATCTCTGGGTTTTCCCTTTAGAAATTCTTCAGCTGGTAAACTTGGTTACACTCAAGCTAAGGAACAATCCCATCAAAGAAATTCCCCATGATATAAAAATGCTCAAGAGGCTTATAGTGTTTGAGATTTCTTTCAACTCTCTTACGTCCTTACCCTCAAGTCTTTTTCAGTTAAAGCATCTTGAAATATTAGACCTGGCTTACAATCGTCTCAAATTTATCTCATCAGACATCGCAAATTTAAGCTCCCTCAGAGAACTAAACCTGGAAGGAAATCAACTTGGAGCCATGCCAGTTGGAGCTCTTTATCTAAACCTCAAGTATCTTAAAGTAAACAACAATTTTATGCATCCTTTTCTGTGGAGAGAAGCAGCAACCAACCAACCTCAGCGGCTCGGTGATCTATCAGCTTTAGCAGTGTTCAAAGCAGGACTCCACATCAAGATTAGGAGTTTACCAGCAGGGATCAAAAGCATTATGGAAAGTTACACTCGTTGTGATTGCTGTGACGGTCCAATGTTTGGTCCCGGAGTACGGATTATCAAGGCTCCTTCGGAGATTTTCGGCATCAAAAATCTTCCTTTCCTCTTCAACGCCTGTACACAAACTTGTAGAAGACAGTTCAAGAAAAATCCACAGTCACTAAGCGAGTGGCTGAAGAGGAATGTGCCGCTAAATGTAACCTTTTAA

Transcript

ANN26670-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6H694	Leucine-rich repeat-containing protein 63 OS=Mus musculus OX=10090 GN=Lrrc63 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005897 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR050216 all species →	Family	Leucine-rich repeat domain-containing protein	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48051 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN26670-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.