Detailed information of ANN26688-RA in Leptoseris scabra

Genomic Location: Scaffold_13__1_contigs__length_39802057:6140116...6147697
NR annotation: XP_029186180.1, retinoblastoma-binding protein 5 homolog isoform X2 [Acropora millepora]
Species abbreviation LSCAB · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9VPH8Retinoblastoma-binding protein 5 homolog OS=Drosophila melanogaster OX=7227 GN=Rbbp5 PE=1 SV=2
Q15291Retinoblastoma-binding protein 5 OS=Homo sapiens OX=9606 GN=RBBP5 PE=1 SV=2
Q8BX09Retinoblastoma-binding protein 5 OS=Mus musculus OX=10090 GN=Rbbp5 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005073 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037850
all species →		FamilyRetinoblastoma-binding protein 5/Swd1Interproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44040
all species →		RETINOBLASTOMA-BINDING PROTEIN 5Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0048188
all species →		Cellular ComponentSet1C/COMPASS complexInterproscan
GO:0051568
all species →		Biological Processobsolete histone H3-K4 methylationInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN26688-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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