Gene detail

Detailed information of ANN26721-RA in Leptoseris scabra

Genomic Location: Scaffold_13__1_contigs__length_39802057:6889809...6916433
NR annotation: CAH3140127.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN26721-RA

ATGAAAGGCAAGCAAGACTTTTTGACGGAACAAAGTAGTCTAAACACCTACTGTTTGTCTGTTAGCCTTTCTCAAAGTCCTTTCCTTCCTCTTTCCTCGACTAGCGAGCTAGTCTGTGTGTTTTTCACGGCGATTGCTCATAACCCATCTGGGATAAAAATTAAAACTATGCACGCTTTGCGTGTCTATGTTTTATGGAAACTCACGTCCTCTCAACAGAGAGAACCTGGGAACCAAATTAACATCATGCTCCGCGAGTGCAGCGGAAGTGACGAACATCACTTGAAAAAAACAATATGTCCGCCAGAAAAGTATCCCATTGTAATATTTCGTAAACGCTCCGGGCAAAAGGCCATCCAAATGACTACAGTCTACATGCATTCGATAATCTTGTGTATTATCTGCATTTGTGTGTGTCTTTTCCCTGCTTATGGGTCTCTGTTAGTCTTCAATCGCTTGAATGCTGGTTCAACGAATTTTCTCGAGTACAAGAATGGCTCTATGGGAAATCAGACGAGTGGTATGGTGTCCAATAACAGAGAGGAGGTGTGGTTATATGAGTATTCTTGGCCAGAGAAGATAAAGCCTCATGCAGTGAGAGTTAGCGTCAAAAGTGATGCAGCAACTCAAATTTACCCCTTGTTGTTTGTGGCACGCTTACAGAGAGGAGTAATGTCTTGGTCAATACCAGAGGAAAAGTATAATTACAGTCTTGCCAGCCGTACCTTGTGTCCTTTCCTTCATAGCCTTGTGCTAATTAATGACTCGGGGACAGAGTCTTTCTCTGTTGATGTCTCCACCTCCTCACCAGAGCCTGTCAATTACACTTTGAAAGCAGAGTTTGCCCAGAACTTTCAGATAATGTTTAATAAACCCTTGACTGTGACAGTGGATCCAGCACAACCCTGGTACTTCTTGTGGAGGTTTCCAGATGACGTGGATACTGTTGTAGTTAAAGCTGAATCAAAAGACGCTAAGTTATGTGCGATTTTTTCCATTCAAGGAACACAGTGTCCTGTGTATGACTTAGCGAGGAATGTGGAATTCACAGGCTACTTTCAGACTATGACGACCAAAGCAGCCATTACAATTGAGCGTTCCACCTTCGGTCAAAATGAGTTCTACATTGTTTTGCTTGTGAAGTCATCTGATGAAGAGTGTGACACTGGGGAACGTTTTGTACAACCCGGCAATAAGAAAGCTGGACCCAAAGACTCCCATTATGCAGGTCCACTTTCAGAAAGACAGAAGACTGTAAAAATAACAGTGGAGCCTACTCTGTCAGCTAAGGGTTATGTGAGGGCCATACTAGCTCCTGTCGCTTTCTTTGGATCATTTTATTTCATTGCATTTATCGTCCTCTTCATCACCTGGTGTAGACAAAAAGGATCAGGGCGCAGGGAAAGAAGTTTTCGATCTATTCTGATGCCAAAAGAAAGTAATATTCAAGAAGTTGATAATAGTACTCCAGTTAGTACACCATTGAGGACGTCTTCCACCAGGAGATCAAGGGATCACTATGGATCAACCCCACGAGAGAATGATCCATTGTTTGAGCATGACAGTGTGGATCACTTGGAACAGGATAATAATTCCTTGGTTACTGACGGCACAAAAGAGCCCACATCAAGAGAGTTTGAGCAGCACTATGACATGTTGCATGATATTGATCACGAGAAAGATATATACAGGCTAAGGACTAGCCTCATGCTAACAGACTTAGCAAAGAAAGAAAAGAAGTACCTGAAGAAGAAATACAGGCTCTATCACTGGAACCTTCTGATGATAGCTGTATTTTATGCCCTTCCAGTTGTTCAACTTGTTATCACTTACCAGAAGGTTCTTAATTTCAGTGGAGATGAGGATATCTGTTACTATAACTTCTTTTGCGCTCATCCCTTGGGAGTGTTAAGTGCTTTTAACAATGTATGGAGTAACATTGGTTACGTCATGCTAGGATTTCTTTTCTTTCTCCTTGTCATGCGACGTGACAGACAACATAAGCAAGATGTTGCAGACAACAGTGATCTAGAGAAGTATTATGGAATTCCTCAGCATTATGCCATATTTTATGCCATGGCACTAGCCTTGGTGATGGAAGGTGTCTTATCAGGGTGTTATCATGTTTGCCCTAATAACTCTAATTTCCAGTTTGACACCTCATTCATGTACATCATCACCTGTCTTGGCATAGTGAAGGTTTATCAGACTCGTCATCCAGACATTGCTGCTAATGCTCACAGTGTCTATGCTGGATTTGCTTTAATCATCCTCACAGCTGTCATTGGAGTGGTTTACAGTTCCTTTGCTTTCTGGACCACCTTTGCAATCGTTCACGTCTTTGGCTGCCTTTACCTTAGTTCTCAAATATATTACATGGGAAGGGTCAAGTTTGATGCTGGCATGTTTTCAAGAGTGTTTGTCTTGTTGAGATATGACTGCTGTGCATGCCCAACTTACAAGGATCGAATGCTTCTGTTGGTGATTGCCAATATGGTGAATTGGTTCTTTGCCATATATGGTGTCGCAACCACACCCAACGACTTTGCTACCTATCTGCTGGCCATTTTGATTGTCAATGGACTTCTTTATTTGGCATTTTATGTAATAATGAAGTTGAGAAACAAGGAGCGGATTCTTCTCTTTCCTCTTGTTGTTCTTGGTTGGACACTCGCTTGCTGGATAGCAGCCCTGGTTTTCTTCTTGAACAACCTAACATCTTGGCAGAAGAGTCCGGCTCGATCACGGGAAGAAAACAGAGACTGCTTTCTCCTTGGTTTCTACGATTACCATGATGTTTGGCACTTTCTGTCCGCTTGTGCTTTATTCTTTTCGTTTTTGGGTTTGTTAACACTGGATGACGACCTCCTCAGAACACCAAGACATAACATCCCTGTCTTTTGA

Transcript

ANN26721-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NXL6	SID1 transmembrane family member 1 OS=Homo sapiens OX=9606 GN=SIDT1 PE=1 SV=2
Q6AXF6	SID1 transmembrane family member 1 OS=Mus musculus OX=10090 GN=Sidt1 PE=1 SV=1
Q6Q3F5	SID1 transmembrane family member 1 OS=Rattus norvegicus OX=10116 GN=Sidt1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003400 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13965 all species →	SID-1_RNA_chan	dsRNA-gated channel SID-1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025958 all species →	Family	SID1 transmembrane family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12185 all species →	SID1 TRANSMEMBRANE FAMILY MEMEBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0050658 all species →	Biological Process	RNA transport	Interproscan
GO:0051033 all species →	Molecular Function	RNA transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26111	SIDT1; SID1 transmembrane family member 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.