Gene detail

Detailed information of ANN26800-RA in Montipora grisea

Genomic Location: Scaffold_4549__1_contigs__length_31906:4859...7556
NR annotation: XP_019851475.1, PREDICTED: E3 ubiquitin-protein ligase HERC2 isoform X2 [Amphimedon queenslandica]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN26800-RA

ATGGCCCTGAAGGGAGAACGTGTGACATGTATGGCATGTGGGAGTGGCGATTCCCAGACTCTCTGTGCCACTGCCAGTGGACTTGTCTTCTCATGGGGAGACGGAGACTATGGTAAACTTGGAAGAGGAGGAAATGATGGGGGCAAAGGGGATTACTACCGTCTCGGCCACGGGGATGACTCTCACCAGCGTTCACCAAAGAGGGTGATGGGAGCTCTGGCCAGTGAGAAGGTGGTAGACATTGCCTGTGGTTCCCTCCACTGCATTGTGTGCACGGAGAGTGGGAAGGTGTTCACCTGGGGGGACAATGACGAGGGTCAGGTTGGGAATGACTCCAGCACTCCCGTACAGTCACCACACCAACTACGACTACCAGATGACATCCACTTTGACCATGTGACCTGCGGCTCTGCCCATACGGTTGCCTGGTCGTCCATCAGGAGGAAGGTGGTCTGCCAACTGCCCGAGAAGGTACCCATGGAGTTCAACCACCTTCAGGCAATTCCCATGCCCGTACTGAGGAACAGGCTCATCCTGCTACACCACTTTTCAAACATGTTCTGCAAGTCACTCAGCCTGTTTGGCCTGCAGTCACGGCACACGGATTCAGGGATTACCCACGAGGGTGCCTTTGAGGGTTTCGATCGCCTAAGGGCCATCATTCTATCAAATGCAAAGGTCAGTAGCTGTCAGTTAAGTAAGTTTGAATCGTTGAGTTGGCTCGTGCTGAGTGACCAAGGTTTTCTCTTACACCCTCTTCAGGAATCAGCATTCAGGAGGGTTGTCAAGGCAACTATGACCCAGGGGAAGCAGCACGGACCTGTCATTGAACTGAACAGAACACAAGTGAAGCACTCGAGATCTCGTGGTGGACTGGCTGGCCCTGATGGCTCGAAATCTGTCTTCGGGCAGCTGTGCTCTAAGTGGATGGTAATAAGCCAGGAAGACCTCCTACTACCCCACAGGATCTGGAAGGTCAAGTTCATTGGGGAGGGTGTTGACGACTGCGGAGGTGGCTACTCTGAATCAATAGCTGAGATGTGCGATGATTTGCAGAATGGCTCCGTCCCCCTGCTAATCCAGACACCAAATGGGAGAGAAGACACAGGCGTCAATCGGGACTGCTTCATCATTAACCCAGCGACCACTTCACTAATCCACATCAACATGTTCCGTTTCCTTGGTGTTCTCATGGGCATAGCTATCCGCACGGGCTCACCAATCAACCTCAGCCTTGCCCCTCCTATCTGGAAACAGTTGGTTGGAATGCCCCTCTCCTTATCTGATCTCTCAGAGATCGATAGTGATTATGTTCAGGGGCTCCTCTACATCCGAGACAATCCTGATGCCTTCCTAGGCATCGAGTTCACAGCCCCGAGTGCCACTGGCAGGGAAGTCCGGCTGCATCACAGCTGGACCCACGTCACAATGGAGAACTACCAGGAATATGTACGGCTTGCCCTGCAGATGCGGCTCCATGAGTTTGACCAGCAAGTCTTTGCCATTCGAGAGGGCATGGCCAAAGTTGTTCCTGTCCCTCTCCTCTCTCTTTTCACTGGCCCAGAACTCGAGACAATGGTCTGTGGAAGTCGGGAGATATCCATCAGTCTGCTCAAATCCGTGACCACATACAAAGGGATCGAGCCAACGGCACCGCTGGTGCGGTGGTTCTGGGAAGTGATGGAGGAGTTCAACCAGACAGAGAGGTCACTGTTCCTCAGGTTTGTCTGGGGGAGGACACGACTGCCCAGGACAGCTGCTGACTTCCGAGGCAGAGACTTTGTCCTACAGGTCAGTGTCTCAGTATTAGGTTCAAGAGTGGTGCTGTTTCTCAAGATTTGTGCCCAGTTTTTGAGGGTCGAGATTGCTTCAGAAACAGTTGGTTCAGTAAACAGATTTCAACAAGAACCCCAAGAACACTGTCAGGTCCCCCGCTACTCCTGCAAGCCAGTTTTGGAAGAGAAACTCCGCTATGCCATCAACTTCTGCAAGTCGATTGACACTGATGACTATGCCCGTGTTAACCTCCAGGAGGGGCTGATGATGGACGACGACGAGGACCTGGAACTGGAGGAGATAGCTTGA

Transcript

ANN26800-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4U2R1	E3 ubiquitin-protein ligase HERC2 OS=Mus musculus OX=10090 GN=Herc2 PE=1 SV=3
O95714	E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens OX=9606 GN=HERC2 PE=1 SV=2
Q9VR91	Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster OX=7227 GN=HERC2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002667 (this species only)
Ubiquitin family	E3\|E3 activity\|HECT · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00632 all species →	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF00415 all species →	RCC1	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR042469 all species →	Family	E3 ubiquitin-protein ligase HECTD3	Interproscan
IPR000408 all species →	Repeat	Regulator of chromosome condensation, RCC1	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46654 all species →	E3 UBIQUITIN-PROTEIN LIGASE HECTD3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN26800-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.