Gene detail

Detailed information of ANN26902-RA in Leptoseris scabra

Genomic Location: Scaffold_13__1_contigs__length_39802057:10037779...10052287
NR annotation: CAH3034199.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN26902-RA

ATGTCCCTGAACCAAGAAACGCAAGGTAAGAATAACATGGCGCTGCCCGAGCAACATCCGAGGATATGGAAGTCGCGTCTGCAAAGATTTCAAAGCACTATAAGGCAGTCTATTCGATTGAAAAAGGGAAACTCACGGAGATCAATGTCTTTTGCCAGTGACGAAAACCGTGTTGGTCTTGCAAAAGAAGACGATAATCGCGGCTCGAAACGTTCTGCGAAGCACGTGAGGCGAAAAATTTTGGTCAAGGAACAAGACAATACGGTGTCACGTAAACAAGATAATGAGACGAAAGCAAATTCACACTCGCATTATCGAAATGGAAAAACATCACTTGACAGTTCTAGTTTGGATAAGAGGAAATTTGAGAAAATCAAAACAAACGGGAATAATAATCGTAAAGAAAAGAAAATTACCGCGGAATCTTCTTCGAGTAACGTTCATGTCACCGAAGTGCCAGTTTGTGGTCAGGATGCATCAAAATCGAAGAAAAGATCACAAGGACCCAAGCGGCAGAGGGCTAACACAAATATAGAAAGAACATCACTTTCAAAATCAAAGAGCTTAAGTATACTGACGAATTTATTTAAGCGATCTAATCATTCAAAAGACAAAAGTGAGCGTGGGAAAAGCTTGTCATCCGCGACACCGCAAACCGTGGCATCGAAAGAATTACGCTTATCGTCAGCTTACAGCGCTAATTTGGAGACTCTAGTGACAGATATAGCTGCAAGTACTTCATCGATTGATTCTTACGGAGATAGCGATTTTCACTTCAGAAGCAAGAAGTACTACTCGTTGAAGCGATCAAAAGGATCCTTGGTTTTCCCGAAGAAGAATCTTCCGCGGTCGTTTTCTCTGGACAGCGAACTGGATCCTTGTAATCCCCCTATGGAAAAATCAAGAACTTTGGCCGCGATTCCACCTTGCATTCGAGTTGACGAATACCGCGAAAATCGCGGGGTTTTCGAAAAGGCACGTACAGTAGAATTTGTCCCTGGCTCTAGTGGATCAGTGGCCATTGGTACGAGAGCTGATTTTGATCAAAATGTGACAGGATGTTCGCATGTGGTGGGCATCCAACCAGGACAAGAAGTGGACCCACTCCCAAGTGCTACTCAAGGGAATGGTGTAAGGCACGAAACACGGTCAAATATCACCCATCGAACCGCGAAGAACAATGACGCACAAAAGAGACACTCTGCTCCTCCTTCACAGCTATATTCAGCTCATAAAGACTCATCAAATATTGGTTCGCCAATTTCTTCTGTAAGGAAGACGGATATTGCCGCGGGAGACGGTAATAACCATCAAATTGAAGAGAATAGTTCCGAAGGTGGATCGAAATTTTTAGAGGAGAGAAGTTCATCCTTGGAAACGACCGATTGTGGAGAGTTTGTTAACTTGAAATCTGATATGGGAAACAACTCATCTTATGGACAAAAACCGCGAAAATTCAACCCAAGGGATGCCAAGTTTAAAATGGAATTCCTTCGGTCCTTCAAGAACAGCGGAAAATCTTTTTATCTGAAGAACGCGTGTGATGGGGAAGCCGACCCGATCATTCAAGAAAACGATTTTCTGGAAAGCTATGACCGTGATCTTGAAAATGGAGTTTTCAATTATCCCGCCAAGGTTAACAGTGCAGATAATGGGTTGACAAAAGACAAATGTACTTCTTTGTACGAGGGTACTGAAGCGCTTGCTGACTGTAAAACGATGATTGATAACTTTCAAAAAAATAATAACGAGCAGGATTTTTGTGTTGTTAAATCAACAATTGACGAGATCACAGAGGAACAGTCGGACGAAAGCGAGAATACAGAAGAAAAACTCGCCTGTGAAAGCACGGAACGTTTACCCTGCGAGAAAGTAAACAACGAGGAAAAAGTTTGCGAAGAACGCTTTTGTTCTACGAATTGTGGACAAACAGAGGAAGATGGGTCAACGCAACTGCGGGAATGTTTATCTTGCGTGAAAACAAGACGCGAGTTGACAGATTCACGTTCATTGCCGAGTTCTCCAAGGTTTTCTGAGTCATCACGAAAAGCAAACGCCGGTGGATTAAATATACAACATTTGCGTGATCAACTGTCAGCCGACTTAATTACAAACAGATTAGGAAAGACTTGGAATGGTGAACACGGATTGGCTGAGAAAGAAATACAGACTGTTAAAGTGAATAGTTTGCCAAACTCGTCCAAGCAATCTTTGTCACCTGTGGGATCAAATTTAATGATGTATCACAGCTTTCCAGATATCAGGAAACTTCACACTAATCATCTACTACCAGTGAATCTTACAGCTAGCACCGATAGCCTTAATTCATCTTGTAGTTTAAATATAGACAACAACTTTGAAGATGACAGTGCAACTGTAGAGAACAATGGTGAAAAATCACCATCCGATCTTTCTCCGGATCTTTCAAGATGCAAAAAACTTGGAGGAATTTTAAAATCTCACTTGGCTCCAGAATCTTTTGAAGAACGTCAGCGATCATGTAGCGCAAGGATTCCATCAAAATCACCGATTCAACATGTGCTGTTTGTAGAGAATCGTTCAGTATCTTGCTCCCAATTGGACAAGGATAATGACAGTCCAGCTTCTACTAGTCCACCATATGTCAGACCAAGAATTCAGAGTCTTGAGGAATTGCCACCATGCACAGCAGAGGTGGTGCTTAGGAAAAAGAGAAGTATCATTAGAAAACACAGAATGAAGCATACCGCGTCATTATCGTATGTCGACAACGTGTTCAATGAAATGATTGACAAGGGAAAGCGTCATTCATATGGTGGCTATGGTGACAACATTTTCCTCCAACTTCCTCAGCATGTGCTGCAGAGATCTAACAGCACTGGAAGTTGTAACAGTTCACAGCAGTCGATTAACTCTTCATCATCATTTACAGAGAATGATCTAGGCAGTACTTTCTCTGTCACGTCAGAACTCTCCTTCCCTGGTAACTTTGATGTCAGTCTCAATCGTTCACGCAGTGTACCTGGGTATCTCGGTATTGCTGATATTCCTCAGCAATCTCCTATCCCAGAAGAACGTGCTTCAGTATCTGATATGGATTGGCCCTCACAGTCAGAGCAGAACAGTGATAATGAGGAAGACGAAGATGATGATGAGATGGATGTACCAGAAGCTTTTGCGGAGGCGCTGTGGGATCACGTGACCATGGACCCAGAGGAGCTGAGTTTCGAAGCGGGTGACATCATCACCGTGCTGACAATGACGTCATGTGATTGGTGGTTTGGACAAGTGGGAGACCGGGTCGGCTGGTTTCCGGCGCCGTTTGTTCGGGTCCGCGTATCACAGACTCTTGCAGCTGACGAGACCAAACTCGCGCCTCCTGTGCGAACAAGAAAAGGAACAAACGAGGGGTTTCTCTCTGATGCTGACGTCAGGTCGCGTGTTGTGCTCGAGATCCTGAACACGGAAAGAGATTACGTCAAAAACCTGGAGGATGTAGTGGAGGGTTACCTTAAACAAGCACGCAAAAGAACAGACATGTTTACCGAAGAAAATATAACAAAGATCTTCTCCAACGTCGAGCAGATTTATGAGTTTCATCAGGAAATCTTAAGACAGCTAGAAGACTGTTTTGAGGCAGAAGACCCATGTGCTTCGGAAATTGGTTCTGTGTTTCTTAATAACAAAAATGGCTTTGAAATTTACTCCGAGTATTGCAACAATCATCCTCATGCAATGGCGGAACTGAAGACCCTCTGTGAAAGCAACAAATACAAGCAATTCTTTGAGGCGTGTCGCCTTCTCCAAGATATGATCAGTATATCACTGGATGGATTTTTGCTGACACCAGTGCAAAAGATTTGCAAATATCCTCTGCAATTAGCGGAATTGAAGAAGCACACGAGACCAGCTCACAAAGATTTTCAGACGGTCACACAAGCACTGGAGACAATGAAGAACGTGGCCTCCTTAATCAACGAACGTAAACGAAAAGTTGAGAGCATCAACAAGATTGCCAAATGGCAAAGTACGATCGAGGGGTGGGAGGGTGACGATGTGCTTGAAAGAAGCTCAGAGCTGATTCACTCCGGAGATGTCATCAAGACTTCTAACGGCAGCTCGCAGGATCGAGTCATGTTTCTGTTTGATCATCAACTCGTGTACTGCAAAAAGGATATCTTAAAGAAGAATGGTCTGACGTATAAAGGAAGAATCGACATGGACGACTGCACCGTAATTTGGCTGAGAGACGGAGAAGAAAATCTGGACCGTTCGCCCCTCAACAACGCGTGGAAAATCTACAACTTCAAGAAAGAAAAGTGGTACATATTCTACACCAAAAAGGCAGCTGAAAAAGAAAAATGGATGAAAGCGTTTAAGGAAGAGAGACGGCGGGTTAGCGAAGATGCGAAAACAGGTGTTATTATATCACAGAACACAAGAAAATCTGCCATGAGAGCAGCAAAGGCCTCCCTCAAACACAAGAAACTCAACGGTGGCAGAAAAGACAAGCCATTAACAAAGACACCTTCCACAGCAGAGATCAAACCCCCTCCATCACCAACTCTGCGTCTACCCGCCCCAGTCTCCAGCGCTGATCTAAGGGAAGTAGATGAAGACAAAGATTTGAATGATTCCCTTGGCGTCAGATCTTCTGTTATTCGAAGGAGTTTTGGTTTGCGAGGTTCGAAAAAGAGCAAAGAGAAGCGCAAGAGCTCGATATTTTAA

Transcript

ANN26902-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NR80	Rho guanine nucleotide exchange factor 4 OS=Homo sapiens OX=9606 GN=ARHGEF4 PE=1 SV=3
Q96N96	Spermatogenesis-associated protein 13 OS=Homo sapiens OX=9606 GN=SPATA13 PE=1 SV=1
Q5DU57	Spermatogenesis-associated protein 13 OS=Mus musculus OX=10090 GN=Spata13 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003864 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR001331 all species →	Conserved_site	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR053086 all species →	Family	RhoGEF domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45834 all species →	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05769	ARHGEF4_29, ASEF1_2; Rho guanine nucleotide exchange factor 4/29	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.