Gene detail

Detailed information of ANN26915-RA in Leptoseris scabra

Genomic Location: Scaffold_13__1_contigs__length_39802057:10196386...10204372
NR annotation: XP_015753546.1, PREDICTED: cyclic nucleotide-gated cation channel alpha-3-like [Acropora digitifera]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN26915-RA

ATGTTTAAAATCTGTTACTTCTTGCAGGTGTTCAATTCACCAACAATGGAGAGACATACTCACCTTAGTCAAGACCAAGAGGAAACTCCGTTGACCGCCGGAAATCATGTAACAGACGCGACAGAAGACGGGCCACAGATTCCTCGCGTGGTGATCGAATCCACTGGTCAATCGCGATTTGCGAGCTCGGTGGTAAAAGTCTTATCGCTGCAGCGATTTTATAAGAAGACCGGACAACGATCCCGAGATTCCTGGCTTGAGCGATACACATACCAGGACGAGAGGGATTGGCGCCGGCCGCTCATGCGCAGATCAGCATCAAATTCGCCGCAAGTGCAGAGTCCCTCATCGGAGGGGACGGGGAGTTCCCGAGAGACTTCGGACGCTTGGTTGGATCATGACAAACAGCGCTGTAGCTGTAATGTAACACTGGTCTTCGATCCTTCTGGAAACGTTTATTTTTTCTGGTTGCTCACAGTAGTTCTTGCGATCTTGTACAACTACTGGACTATAATATTTCGCGTGGCCTTCTTCGTAAGAGAGCAAAAGTATGTCATTCCATTTATGGCTATAGACTACAGCTGCGATTTCATCTTCCTCCTGGATATCATCGTGCAGTTTCGCACCGGACATTTCCTGGATGGCAAAATAGTCACGGACACGAAACAGCTGGCTAAACGTTATTTTAAGTCTCGCGGTTTCTTCTTAGATTGCGTCTCAATTCTCCCTACCGATCTCCTTTACTTGGTGCTAGGTCCCAGGCCTTTCTTGCGCTTTGGGCGTCTCCTTAAAGCACACCGGTTTTTCCTGTTTTGTGACCGTGTTGAGATCTACAGCGGCCGCCCTAAGTTGTTCAACCTGTTGAAGCTGATTCATTACCTGTTTCTCATTATCCACTGGGTGGCTTGCTTCTACTTCCTTCTCTCCTACTTCGAAGGATTTGCCGTCGATAAATGGGTGCATCCAGCTCTGGAGGGACAGTGGGCCGAGGTTGGACCACAATACCTGTACAGCCTGTTCCGTTCACTCGTTTCCATGACAACTGTGGGTACAGGTAAGAAGGCGGCACCGCAGACCACCACGAGCCTGGTGTTTTGTATCTTCACATACCTCTGCGGGGTGCTTATCTTTGCCACTATTGTGGGGAACGCTGCAGACATGATTGTGGATCTAAGACGACACAGAGAAAAATACCACAGAAAGCTGGACGGAATGAAAGAATACATCGCAGCCAACCAGCTGCCAATGGATCTGCAGCGCCGCGTCATACAATGGTTTGACTTTGCCTGGAGATACAGGAAAGACATGAGTGAAAAAGAATTGTTTGAACAGCTCAACGACAATTTCCGCGCGGAGATCGCCATTCATGTCAACTTGGATACACTGAAAAAAGTCAAGATGTTTGAGCACTGCGATCCCAGATTTCTGCGGGAACTTGTCTTAAAGCTGAAACCGATGCTTTGTTCTCCTGGAGATTACGTCTGTCGCCAAGATGAAATCGGCCGAGAGATGTACATCGTCAACAAAGGAGAGTTGGAAGTCTTAGATAAAGGCGGAGCAGTCTTGGCTAAACTTTCGGCCGGCCGACACTTTGGCGAGATAAGCATCCTCGACATGAAAGGAATCGGCAATCGTCGGACGGCTTCGGTCCGTTCCGTTGGTTTCTCAGATCTTTTCCTACTAAGCAAAAAGGATCTAGAAGAGGTGATCGAGTACTACCCCGACGTACAAGATCAGCTGGCGAAGATAGCACGACAGACGTACGAGAATCAACGACGAGAGCGACTTAATCAGAAAATTAAAGTTGAAGAGAGGGCAGAAGACTCCGTTCTGGAAAAGAACGATCCTCGTAGATGGCTCACGGCCGACAAAGCAACTCTTCGGCGCCGATTATCAGTGATTGAAGCCAAAAATGATGTAAGGTCTCTCGCAAACAAGTTCAGAAGAGAGAACGGTCGTGAGGTAAATCCACGCAAAGACGTGGTCTTATTAGCACAGCGCGCAAGAATGGAACGCAGTGACGAGGAATCCAGGCTGATTGTAAAAGAGTTTTTGGCTCAGAACAGCAAGAACAAAACACTCAAACGAAACACGATCTCAAACGACAGCTCTTTGGTGAGATGTGACGAAAGCCGGCGCGATAACTGCACCAAAGAATTCACCCCGACCTTCATGGGGAATAGCGCCATTGATCAGCTGAGAAAAAGCCAGAGAAAGTTCTTCGGTCGGCCTCGCTCACGCACGCAGGACTCCAATCCTACTTCACCAACAAGCAACGACATTCCATTATTTACATTCAAATCTAACGCGTCCGGACACAACGAACAGAAAAGAGGATCACATGACAAAGACCACGAATCCAGTCCACAAGGAGCGTTTACTATTAAACTAAACAACGCTTCCAACCAAGCTATGAAGGCTAAAGGTCTGAAGAAAGGCATTCTGAAACACGGCAGCAACGAGATGATAAACTTGAGACCGTGTGATTCGATGGAAACTTCATTTTGTGATGAAACTGTTGGGAGTGATGCTGAGAATCCAAATTCCAGTCACTCAGGTAAAGAAGAACATCAAAAGATCAAACTTAAGGACAAGATCAAAGCGCATTTTACGAAAGACAAAAACAAACAAGAAACAAGGGTAATCCTGGCCACACCAGAAAACAGCGAGATTGTGGAAGATTCGCCCAGATTCCATCGAGCCACCAACCGGATCATTCCTACCGACAGGGACCCCATAAAGGAAATCAACATGGAACTGAATTCCATCTCTACCGAGACAAACTGCACGTGTCAACTGGATGAGGCTCAGGTACAGACGAGTGACACACTGAATACCACTCCTGCCTCTGTAGAGCATGCGCCAAGAAAGCTATCCGCGGGTCAGGGGGCAGGTTCGAGTGAAGGCTCTCTCTGCCCCTCTGCGCTGGATGATCGAACGTAG

Transcript

ANN26915-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JJZ8	Cyclic nucleotide-gated channel alpha-3 OS=Mus musculus OX=10090 GN=Cnga3 PE=1 SV=2
Q9ER33	Cyclic nucleotide-gated channel alpha-3 OS=Rattus norvegicus OX=10116 GN=Cnga3 PE=1 SV=1
Q16281	Cyclic nucleotide-gated channel alpha-3 OS=Homo sapiens OX=9606 GN=CNGA3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000765 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00027 all species →	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050866 all species →	Family	Cyclic Nucleotide-Gated Cation Channel	Interproscan
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR018488 all species →	Conserved_site	Cyclic nucleotide-binding, conserved site	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45638 all species →	CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005223 all species →	Molecular Function	intracellularly cGMP-activated cation channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0017071 all species →	Cellular Component	intracellular cyclic nucleotide activated cation channel complex	Interproscan
GO:0044877 all species →	Molecular Function	protein-containing complex binding	Interproscan
GO:0098655 all species →	Biological Process	monoatomic cation transmembrane transport	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04950	CNGA3; cyclic nucleotide gated channel alpha 3	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.