Gene detail

Detailed information of ANN26949-RA in Leptoseris scabra

Genomic Location: Scaffold_13__1_contigs__length_39802057:11016076...11023987
NR annotation: CAH3175464.1, unnamed protein product [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN26949-RA

ATGATGGCTGGACAGCTCCCTTTCCTGAACACTTCTGGTGTAAACTTGCTTCCTTTACTTGGGAAACCTTTGGGAAATCCCCAACAGTTCTTCAACCAGATAAATTCATTAAGAATGCCAAGGCCGAACACTAGTCAGGAATTATTTGGCCAGGAGAGTAACAGAAGACAGAGAATGCAATTCTCTGATGATCATTATAACAGAGAGCCACCAGATATCCGTGGAGACGGGCCGTTCAGAGAACCTTACAACAGGTTAAGACGTAACCGATCTCAGGAAGAAGACAGTTATGCTGGTGAAAATCGGGAAAGAATCCGTGGACTGATGGACAAAGAAATTCCAGTAGATTTCTTGTTCCCAGAGATGGGAACAGACAGGTATAATGAGAAGCAAAGGAGAGACGACTTTGAAAGACAAAATTATGGTGCTTCCGCAACCAGGCAAACACCCATCCGACCTTCATCAGAGTCAAGAGATCAAGAAGGTAGTACTAGAGAGAGCAAGTATGGTTTTCGCAATGATGCAACTGTTCCCTGGAATGCACTTCTGCGCCGTAACTGTTATCTAGTGCCTCCTTTGGATGACACTTATGTACTGGCCCTGAGTGAGAAGCAGCCAGGATGTCGTACTGTTTTCATTGGTGGCCTTCCAAGCATGGCAGATGAAGACATTATGAGAGAGATCTTCAGCGTATGTGGAGCTATTGAGAAAATCACCATTAACAGTGCCCGAGCAAATAACCAAGTGAGACATTGCCAACTGCGGTTTGTCCAATATGACTCTCTTGAGAGGGCGGTCAAGTTTAACGGTCATGTGCTGGTCATTGGGGATGGACATGACGTTAAAACAAAAATTGGCCGTATACGTGTGGATTATGACAAATTACCAAGCAAGGACATCTTGGAAACAGACAGTAATGTAACAAACAAGCAACCACAGTCTCAAATGGAGGAGAAACCTTTGAGTTTGATGTATAATAGAAAGCAAGCTTTCCATGTCCTTGATCTGATTCGTCATGACCAAGCCATAAAAGAGTCTCTGGATTTAGTGGCACATTGGTTTGAAAAGGGTGAATGTAATCGCTCCACTGTGAATGTTTTCCATTCCTTGCTCACCACCGTCCACAGCCTCATCAAACGGTTAATCAACAGACGGAAGGAACATGAGCAGCGAGTTGAGAAGCAGAAGCAACAAGCTGTGGAAAGAGCCAATGAAATCAAGCAACAATGTGAAGCTGTTTCGAAGGTGTTTGAAGCAGCAACTAAAAAGAGGTCATGGGACCAATTCACTAAGGCACAGCGAAAAAATATCACTCAGTGGCAAAGTGCAATTAAAAACGAAATCAAATCAGCCAAAGAGGCTGAGTTTCAGAATCGCGTTGAGGTAGGTATGGATCTGGATGATGAAGTACCGAGCATGGCTGGGCTTATTGAGCAACCAGCACTGCAAATGACTGAGGGGGAAGGAAAAGCACAGCAGGGACAAGACCAAACACGCCTCTCGCCTTCCAAAGCCAAGAAACGACGAGTGGAAGCTCCAGAATCTGATGCAGACTCATCTGATGCACTTAAGTTAGAGAATAAGAAGTTGCGCACACAAGTTGAAAGTTTGAAGGCAATTGCTGAACAGAACACCAGCCTGATGTGGTCCATGCAAAACTATCAATACCAAGCTGAAAAGATCAAGCAACAGTACAGTAACCTGGTGGCACAGAAAGACTATGAGATTTTTCAGCTGAAGAATGCTTTGCAAGGTGCTAATTTACTCAAGGATCCACAGAGAGCGATGTCCGAGTTGGAAATTGTGGTGGACATGAGCAAGGATGATCCAAATGTAACTGATATGGATCTTGAAACCGGGGAGGAAGGTACTGGAAATAACAGCAAAGAAAGCAAAGAAGAGGAGACGAAGGAGGAGGAAGCACAAAATGAGGAGAGCGCAGAAAAAAACGAGAGTGAAGATGTAAAAGAGAGTAGTGCGCAACTTAATGGAAGACAGGATGGTGATCAACAACAGGTTGATGTAAGCAACAATGAAGGAATTTCCTTAACAAACCGGGCTGAACATCGGGTAACGTTGGAAGAAGGTGATTTTGATCGTGAGGGCGATCCTGTCAGTAGTGAAAGCAGAGACAGAGAAACAGGAGAGAGTAGGATTGAAGATGGCGTGGAGGAGAAGGAGAAGGAGGACGAGGAGGAGGAGGAGGAGAAGGAGCTCATAAAGGAGGAAGAGAATCCAGAAGAAGGAGGTCAAGGAGAAGAGGAAGAGGGCCAAGGAAAGGAGGAAGGGGAACGAGAAGAGGAGACTCCTGTCAAATATGAAGCAGAAAATGAAGAAAACCAGGCCATTGACGAAGCAGTACACCAAGAAGATATGGAAGTGGAAGGAAGCACTTCAGTGGAGGAAAAGGAAGAAATACAAGAAGAGGAAGAAGAAGGTACTACAGTGGAGGAGGAGGAAGGAAGTGGGCGTTTTGTGGAGATAGACGATGAACAGTTTGAGGTCATCGATGACATGGATGAAGAAGACAGTGATGAAGATGATTGCAAGAAAGTTACTGTTCCAAGTTCCGTGAATGAAAATGACAAAGTGGATGAGCAGCTCGCTACTGAATCATCTGTAAACCAGCCTGATAACAGGGTACAGAAGACAGGAGACAGTGAAGATGATTACAAAGAAGTTACCACCGTGCCTCTCACTGCCATGTCTGAAGATAATGACCAACCAAAGGACCAGTTTCCCACTGATTCATCATATTATGATTATGCTGCCCAGTATCAAGCCTGGCTCTCAACTGCGGCGGCCAGTTATACGACCATGGATTATGGACCCTCTCAAGTACGCATTTCTGGTGAGGAGCTCGTGCTTGCTGGCATTATATGTTCCTACCTACAGCTGTGCCCTTCAGGTGCTACAAGTGGCGAAATACGAGACTATTTATCCAGACAGTTCAAAGAACGCAGGAAAGAAGTGGTGGAAAGATTGCTGTACAGTTTGCCTGTTTTGTTCAAGGCAGATGATGCAAGTGGGAATGCCAAATGGAAGTTCTGCGGATTTGAAAACTTGGCAGAGTTTAAGGGCGCGGAGACATGA

Transcript

ANN26949-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BHR2	Ecto-NOX disulfide-thiol exchanger 1 OS=Mus musculus OX=10090 GN=Enox1 PE=2 SV=1
Q8TC92	Ecto-NOX disulfide-thiol exchanger 1 OS=Homo sapiens OX=9606 GN=ENOX1 PE=1 SV=1
Q8R0Z2	Ecto-NOX disulfide-thiol exchanger 2 OS=Mus musculus OX=10090 GN=Enox2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005879 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR038876 all species →	Family	Ecto-NOX disulfide-thiol exchanger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16001 all species →	ECTO-NOX DISULFIDE-THIOL EXCHANGER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007624 all species →	Biological Process	ultradian rhythm	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN26949-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.