Gene detail

Detailed information of ANN26964-RA in Montipora grisea

Genomic Location: Scaffold_5773__1_contigs__length_28614:8056...11217
NR annotation: MBI2993851.1, excinuclease ABC subunit UvrB [Gammaproteobacteria bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN26964-RA

ATGCTGCTCGTGAGTTCGTGTGGATATTTTGTTTATTATTTGAAAGTGAAAGGCGCTGGAAAAGCGTTCATTGTAAAGGCCGTGCTAATTGGTGTTGTAACCAGTACTGCTATGGTGATAACTATTTCATCCAATGAGCTTCTGCAACGGAGAGTTAATATAATTGCAAACCTGTTCAGCGGGGACTATGAGCTTGCTAATTCTGCCGTAGGCAAAAGACTGGACCTTTGGCGTACAAGCATTGTGATTTTTGAAGAAAACAAGGTGAACGGGGTAGGGCCCAGGGGGTTTAGATATGTTTACAGGGACTTTAGTAATCCTGACGATCATTTTTTCGAGACTGCACAAACACATCCGCATCAGCTTGTGCTGGAAGTGCTTGTCGAAACCGGTCTCATTGGTGGTGTCGGCCTGGGCAGTGGTGGCCAGGGTAGGGCCCGGTCATCTGCAGTACCTCTCCTATGCTACAATTACGCACTTTCCTGGCAGATTTGGCTGATGAACGATAAATTTACACTGCACGCAGAATATGAACCAGCCGGAGACCAGCCCGGAGCAATTTCCCAGCTGGTGGAGGGTCTTAGGGATGGTCTCCTGCACCAGACCCTGCTCGGAGTTACCGGCTCCGGCAAGACCTTTACCATCGCTAATGCCATCCAGGCCGTACAGAGACCGACGCTAATCCTTGCACATAACAAGACCCTGGCCGCACAGCTTTACGGTGAAATGCGTGAATACTTTCCGGGTAACTCGGTGGAGTATTTTGTTTCTTACTATGACTACTACCAGCCGGAGGCCTATGTACCGACTACGGACACCTACATAGAAAAAGATGCCTCGATAAATGAGCATATTGAACAGATGCGTCTATCGGCGACCAAGGCCTTGCTGGAACGTCCTGACAGCATCATTGTTGCAACCGTTTCTGCGATATATGGTCTTGGTGATCCCCAGTCCTACCTGAAAATGGTTCTCCACCTTGATCGTGGTGACCGCATCGACCAGAGATTTTTACTTAGAAGACTGGCGGAGATGCAGTACACGAGAAACGAATTTGAATTGCATCGTGCTACGTATCGCGTCAGGGGGGACGTGATTGATATTTATCCGGCTGAATCAGACCGCGAGGCGATTCGCGTAGAGTTGTTTGATAACGAGATTGAGTCCTTATCCCAGTTCGATCCCTTAACCGGCGAGGTGATTAGAAAGGTTCCTCGAATTACTATCCATCCAAAGACACACTACGTCACAGATCGCCAAATCCTGCTTGACGCTGTTGATGTCATAAAGGAAGAACTGGAAGAAAGACTTCAACAATTCAGGGATCAAAACAAGCTTGTTGAGGCGCAACGTCTTGAACAACGAACGCGGTTTGATATCGAAATGATCCTTGAGATCGGTTACTGCGCTGGTATCGAAAATTATTCCCGGCATTTGTCTGGTCGCCAGGTCGGAGAGCCACCTCCGACACTGTTTGACTATCTTCCGCCCAACTCGCTGCTAATCGTAGATGAAAGTCATGCAACAATTCCGCAGCTTGGGGCAATGTACAAGGGAGACAGGTCACGCAAGGAAAACCTTGTTGAATATGGCTTCAGGCTGCCGTGTGCCCTTGACAACCGACCGCTGCGATTTGATGAATTCGAGAAACTTGCGCCTCAAACTATCTATGTTTCTGCCACTCCGGGGTCGTATGAAAATGAACATGCCGATCACGTGGTTGAACAGCTGGTCAGGCCTACCGGTCTCGTGGACCCGCCGGTTGAGATCAGGCCCGTGGCCAGCCAGGTCGATGACTTGTTATCAGAGATAAATGAACGGGTTGAACTGGATGAACGCGTCCTGGTAACCACGCTCACCAAGCGCATGGCAGAAGATCTTACGGATTACCTCGCAGAACACGACGTTCGGGTACGCTACTTGCATTCTGATATAGATACCGTGGAACGCGTAGAGATAATTCGCGACCTTAGACTCGGGGAGTTCGATGTGCTTGTGGGAATTAATCTCCTGCGAGAAGGCCTGGATATGCCGGAAGTCTCCCTCGTGGCAATCCTTGATGCTGACAAGGAAGGTTTCCTGCGCTCTGAAACCACGCTGATACAGACCGTGGGCAGGGCGGCAAGAAATATCAATGGTAAGGCAATAATGTACGCCGACAACATAACCGGTTCCATGCAAAGAGCACTCGACGAAATGGAGCGTCGTCGTGACAAGCAGCAGAGTTTTAATATCGAAAATAACATAACACCACTCGGTATTAACAAGGCAGTGGCAGATATCATGGAAGGCGGGTATTCAGTTAACAGGGCAGGTTCACGCAGGAAATTGAAAGTTGCGGATGAGGTCGATGAATACAGGAACATGTCCGCAGAAGCGCTGATGAAAAAAGTAAAGCAGTTGGAAGAAGAGATGTATCGCCATGCTCGCGACCTCGAGTTTGAAGAGGCTGCTGCAATTCGCGACAGGATTAGAAAGATACAGACAGAAGGATTGGGAATCCCGGAGAGCCAGGCAGGATGA

Transcript

ANN26964-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P72174	UvrABC system protein B OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=uvrB PE=3 SV=2
Q4ZV05	UvrABC system protein B OS=Pseudomonas syringae pv. syringae (strain B728a) OX=205918 GN=uvrB PE=3 SV=1
Q4KF19	UvrABC system protein B OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=uvrB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011532 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02151 all species →	UVR	UvrB/uvrC motif	Family	Interproscan
PF04932 all species →	Wzy_C	O-Antigen ligase	Family	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF17757 all species →	UvrB_inter	UvrB interaction domain	Domain	Interproscan
PF12344 all species →	UvrB	Ultra-violet resistance protein B	Family	Interproscan
PF04851 all species →	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036876 all species →	Homologous_superfamily	UVR domain superfamily	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001943 all species →	Domain	UVR domain	Interproscan
IPR007016 all species →	Family	O-antigen ligase-related	Interproscan
IPR004807 all species →	Family	UvrABC system, subunit B	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR041471 all species →	Domain	UvrB, interaction domain	Interproscan
IPR024759 all species →	Domain	UvrB, YAD/RRR-motif-containing domain	Interproscan
IPR006935 all species →	Domain	Helicase/UvrB, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24029 all species →	UVRABC SYSTEM PROTEIN B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0009380 all species →	Cellular Component	excinuclease repair complex	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03702	uvrB; excinuclease ABC subunit B	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.