Gene detail

Detailed information of ANN26965-RA in Montipora grisea

Genomic Location: Scaffold_5773__1_contigs__length_28614:14170...16704
NR annotation: CAE7417860.1, thrS [Symbiodinium microadriaticum]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN26965-RA

ATGCCGGGACCCTGTTCGCAGGGTGCCCGGATTATCTCTTTAACAAGTGGTCTGTTGTGGGGACCACCACTGAAAATACGAGGAGATAACATGCCTGTTATCACGCTACCTGACGGCAGTAGTCGTCAGTTTGAATCCCCTGTTTCCGTGCTGGATGTTGCCGGTGACATAGGTCCCGGCCTTGCCAAGGCAACCCTTGGTGGCGAAGTCGATGGCCAGATAGTCGATGCGTCCTTCACAATGGACTCTGATAGTGCCCTTCGCATCATTACCGAGCGCGACGAAGAGGGCCTTGAAATCATTCGGCATTCCTGTGCCCACCTGATGGCCCAGGCGGTAAAATCACTTTTTCCCGAAGCCCAGGTCACCATCGGACCGGTAATTGATGACGGTTTTTACTACGATTTTGCCTACGAGCGCGCATTTACCCCGGAAGATCTCCAGGCCATCGAAAAGAAAATGCAGGAGTTGTCGAAGCAGGATTTACAGGTAGAACGCAGTCTCATGGGGCGAGACGAGGCGGTGAAATTTTTCCGCGACATGGGTGAGGAATACAAGGCTGAAATTATTGAGTCCATTCCTGCTGACGAGGAACTCTCGCTTTACAGCCAGGGTGATTTCATAGACTTGTGCCGCGGACCCCATGTACCAAGTACCGGCAAAATCAAGGCTTTCAAGCTTATGAAACTGGCCGGGGCCTACTGGCGCGGCGACTCCAGCAACGAAATGTTGCAAAGGATTTATGGCACGGCCTGGGGAGACAAGAAATCCCTGAAGCAGTACCTGCACCGTCTTGAGGAAGCGGAAAAACGTGACCATCGTAAACTGGCAAAGAAGCAGGATCTTTTTCATTTCCAGGAAGAAGCACCGGGCATGGTGTTCTGGCATCCAAAAGGCTGGCGTCTGTATCGCACTGTTGAGGAATATGTCAGGCAGAAAATGCGCCATCATGGCTACCAGGAAATTCGCACGCCGCAATTGGTCGACAGGAGCCTGTGGGAAAAATCAGGCCACTGGGACAAGTTTCGTGAGGACATGTTTACCACAGCTTCGGAGAACAGGGACTACGCGGTAAAACCCATGAACTGTCCATGCCATGTGCAGGTTTACAACCAGGGTTTGAAAAGCTACCGGGATTTGCCCCTGCGTCTTGCTGAATTTGGCTCATGTCATCGCAACGAAGCTTCCGGCACCCTGCATGGACTGATGCGAGTGCGTAACTTCGTCCAGGATGATGCTCACATATTCTGCACCGAGGACCAGATCCAGCAGGAAGTTTCCAACTTCATTGACCTGCTTTTCGAGGTATACAGGGATTTCGGCTTCAATGATGTCATTATCAAGCTGTCCACCCGCCCGGAAAATCGAGTGGGTAGTGATGAAATCTGGGATAAGGCGGAGCAGGCACTGCAGCTCGCGGTAGAAAGTAAGGGGCTTGAATGGGATTTACAACCTGGTGAAGGCGCTTTTTACGGACCGAAGATCGATTTTTCCCTGCGAGACTGTATTGGCCGTGTTTGGCAGTGCGGCACGATCCAGGCAGATTTTTCCATGCCCGGGCGGCTTGGAGCCGAATATGTGGATGCCAATAGTGAGAAACAGGTGCCGGTAATGCTTCACCGGGCGGTGCTGGGTTCAATGGAGCGATTTATCGGGATCCTGATTGAAGAATATGCCGGTGCGTTTCCACTCTGGCTGGCGCCGGTGCAGGTCGTAGTGGCCTCAATTACCGAGAAGCAGGCCGAGTATGCCAAAAAAATCGCGGAATCCCTGAAAAATCAGGGATTCAGGAGCGAAACTGACTTGAGAAATGAAACGATCGGCCTTAAAATCCGCGAGCAGGCAATGCAGCGTGTACCCTACCAATTAATCCTGGGGGCACGTGAAGCCGAAAATAACACTGTGGCCGTGCGTACGCGTGATGGTGAGGACCTGGGAGCAATGTCCCTGGACGCTTTCATTTCCCGCCTGGAAGAGGACATCGCGTGCCATGGCCTACCGGAAATACGTTTAATCGGCGCCGACGGGGAGCAGGTCGGGGTAGTCAGTATAAGTGAAGCACTAAGACTGGCAGAAGAAGCCGAATTGGATCTTGTAGAGATAGTCCCAAACAGTGAGCCACCTGTCTGCAGGGTGATGGATTATGGCAAGTTCCTGTTTGAACAGAACAAGAAAAAACACGCGGCGAAGAAAAAACAGAAGCAGATTCATGTAAAGGAAGTCAAGTTCAGGCCCGGTACCGAGGATGGTGACTACCAGGTCAAGTTGAGAAACCTGCTACGCTTCCTTGGTAATGGTGACAAGGTCAAGGTTACCTTGCGATTCAGGGGCAGGGAGCTGGCCCACCAGGAACTGGGGGCTCGAATGCTGGAGAGAATAAAAGCAGACCTCGAGGACCACGGCGTCGTCGAGCAGTTTCCCAAGATGGAAGGCCGACAGATGGTAATGGTGTTGGCACCAAAGAAATAG

Transcript

ANN26965-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C5BSQ1	Threonine--tRNA ligase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) OX=377629 GN=thrS PE=3 SV=1
Q21KE0	Threonine--tRNA ligase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=thrS PE=3 SV=1
Q0AAL5	Threonine--tRNA ligase OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=thrS PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002442 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07973 all species →	tRNA_SAD	Threonyl and Alanyl tRNA synthetase second additional domain	Domain	Interproscan
PF02824 all species →	TGS	TGS domain	Domain	Interproscan
PF03129 all species →	HGTP_anticodon	Anticodon binding domain	Domain	Interproscan
PF00587 all species →	tRNA-synt_2b	tRNA synthetase class II core domain (G, H, P, S and T)	Domain	Interproscan
PF05198 all species →	IF3_N	Translation initiation factor IF-3, N-terminal domain	Domain	Interproscan
PF00707 all species →	IF3_C	Translation initiation factor IF-3, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047246 all species →	Domain	Threonine-tRNA ligase, class IIa, anticodon-binding domain	Interproscan
IPR019813 all species →	Conserved_site	Translation initiation factor 3, conserved site	Interproscan
IPR002320 all species →	Family	Threonine-tRNA ligase, class IIa	Interproscan
IPR033728 all species →	Domain	Threonine-tRNA ligase catalytic core domain	Interproscan
IPR012947 all species →	Domain	Threonyl/alanyl tRNA synthetase, SAD	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR001288 all species →	Family	Translation initiation factor 3	Interproscan
IPR036788 all species →	Homologous_superfamily	Translation initiation factor 3 (IF-3), C-terminal domain superfamily	Interproscan
IPR036787 all species →	Homologous_superfamily	Translation initiation factor 3 (IF-3), N-terminal domain superfamily	Interproscan
IPR036621 all species →	Homologous_superfamily	Anticodon-binding domain superfamily	Interproscan
IPR004095 all species →	Domain	TGS	Interproscan
IPR004154 all species →	Domain	Anticodon-binding	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR012676 all species →	Homologous_superfamily	TGS-like	Interproscan
IPR002314 all species →	Domain	Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)	Interproscan
IPR018163 all species →	Homologous_superfamily	Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily	Interproscan
IPR019814 all species →	Domain	Translation initiation factor 3, N-terminal	Interproscan
IPR019815 all species →	Domain	Translation initiation factor 3, C-terminal	Interproscan
IPR006195 all species →	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11451 all species →	THREONINE-TRNA LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0004829 all species →	Molecular Function	threonine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006435 all species →	Biological Process	threonyl-tRNA aminoacylation	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0043039 all species →	Biological Process	tRNA aminoacylation	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01868	TARS, thrS; threonyl-tRNA synthetase	EC:6.1.1.3	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.