Genomic Location: Scaffold_4729__1_contigs__length_31330:16824...18077
NR annotation: WP_076701303.1, elongation factor P [Seonamhaeicola sp. S2-3]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN26975-RA |
| Transcript |
| ANN26975-RA |
| Protein |
| ANN26975-RA |
| UniProt accession | Description |
|---|---|
| A0M298 | Elongation factor P OS=Christiangramia forsetii (strain DSM 17595 / CGMCC 1.15422 / KT0803) OX=411154 GN=efp PE=3 SV=1 |
| A5FFT9 | Elongation factor P OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101) OX=376686 GN=efp PE=3 SV=1 |
| A6GY96 | Elongation factor P OS=Flavobacterium psychrophilum (strain ATCC 49511 / DSM 21280 / CIP 103535 / JIP02/86) OX=402612 GN=efp PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0015554 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08207 all species → | EFP_N | Elongation factor P (EF-P) KOW-like domain | Domain | Interproscan |
| PF09285 all species → | Elong-fact-P_C | Elongation factor P, C-terminal | Domain | Interproscan |
| PF00132 all species → | Hexapep | Bacterial transferase hexapeptide (six repeats) | Repeat | Interproscan |
| PF04613 all species → | LpxD | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015365 all species → | Domain | Elongation factor P, C-terminal | Interproscan |
| IPR014722 all species → | Homologous_superfamily | Large ribosomal subunit protein uL2, domain 2 | Interproscan |
| IPR013185 all species → | Domain | Translation elongation factor, KOW-like | Interproscan |
| IPR008991 all species → | Homologous_superfamily | Translation protein SH3-like domain superfamily | Interproscan |
| IPR001451 all species → | Repeat | Hexapeptide repeat | Interproscan |
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR020599 all species → | Family | Translation elongation factor P/YeiP | Interproscan |
| IPR013852 all species → | Conserved_site | Translation elongation factor P/YeiP, conserved site | Interproscan |
| IPR020573 all species → | Domain | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region | Interproscan |
| IPR011004 all species → | Homologous_superfamily | Trimeric LpxA-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30053 all species → | ELONGATION FACTOR P | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0043043 all species → | Biological Process | peptide biosynthetic process | Interproscan |
| GO:0003746 all species → | Molecular Function | translation elongation factor activity | Interproscan |
| GO:0009245 all species → | Biological Process | lipid A biosynthetic process | Interproscan |
| GO:0016747 all species → | Molecular Function | acyltransferase activity, transferring groups other than amino-acyl groups | Interproscan |
ANN26975-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
