Genomic Location: Scaffold_233__1_contigs__length_138688:53257...56838
NR annotation: MBA3954671.1, RNA polymerase sigma factor RpoD [Candidatus Dependentiae bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN27053-RA |
| Transcript |
| ANN27053-RA |
| Protein |
| ANN27053-RA |
| UniProt accession | Description |
|---|---|
| P17531 | RNA polymerase sigma factor RpoD OS=Myxococcus xanthus OX=34 GN=rpoD PE=3 SV=1 |
| P26480 | RNA polymerase sigma factor RpoD OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rpoD PE=1 SV=1 |
| Q9PDM9 | RNA polymerase sigma factor RpoD OS=Xylella fastidiosa (strain 9a5c) OX=160492 GN=rpoD PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0013438 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01595 all species → | CNNM | Cyclin M transmembrane N-terminal domain | Domain | Interproscan |
| PF00571 all species → | CBS | CBS domain | Domain | Interproscan |
| PF04542 all species → | Sigma70_r2 | Sigma-70 region 2 | Domain | Interproscan |
| PF03471 all species → | CorC_HlyC | Transporter associated domain | Domain | Interproscan |
| PF04539 all species → | Sigma70_r3 | Sigma-70 region 3 | Family | Interproscan |
| PF00140 all species → | Sigma70_r1_2 | Sigma-70 factor, region 1.2 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016169 all species → | Homologous_superfamily | FAD-binding, type PCMH, subdomain 2 | Interproscan |
| IPR000943 all species → | Domain | RNA polymerase sigma-70 | Interproscan |
| IPR014284 all species → | Domain | RNA polymerase sigma-70 like domain | Interproscan |
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR013324 all species → | Homologous_superfamily | RNA polymerase sigma factor, region 3/4-like | Interproscan |
| IPR002550 all species → | Domain | CNNM, transmembrane domain | Interproscan |
| IPR046342 all species → | Homologous_superfamily | CBS domain superfamily | Interproscan |
| IPR000644 all species → | Domain | CBS domain | Interproscan |
| IPR044751 all species → | Domain | Ion transporter-like, CBS domain | Interproscan |
| IPR007627 all species → | Domain | RNA polymerase sigma-70 region 2 | Interproscan |
| IPR005170 all species → | Domain | Transporter-associated domain | Interproscan |
| IPR007624 all species → | Domain | RNA polymerase sigma-70 region 3 | Interproscan |
| IPR013325 all species → | Homologous_superfamily | RNA polymerase sigma factor, region 2 | Interproscan |
| IPR009042 all species → | Domain | RNA polymerase sigma-70 region 1.2 | Interproscan |
| IPR036318 all species → | Homologous_superfamily | FAD-binding, type PCMH-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22777 all species → | HEMOLYSIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003700 all species → | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| GO:0006352 all species → | Biological Process | DNA-templated transcription initiation | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0016987 all species → | Molecular Function | sigma factor activity | Interproscan |
| GO:0050660 all species → | Molecular Function | flavin adenine dinucleotide binding | Interproscan |
ANN27053-RA.
