Gene detail

Detailed information of ANN27069-RA in Leptoseris scabra

Genomic Location: Scaffold_13__1_contigs__length_39802057:13120231...13131596
NR annotation: XP_029213563.2, protein O-mannosyl-transferase TMTC2-like isoform X1 [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN27069-RA

ATGGCGCGCTTAGGAAGTGTAAACAAGAAATACGGCAAAGTAACTCAAAATACCCGCAATTTTAAACCTTACTTGCTCGTAGGAATCACCTCTCTCTGTTGTTATTTGAATTCTTTATTCGGTGAGTTTGTTTACGACGATTATGAAGTTATTGAGACAAACGCAGACTTAAGACCTTCCTCTCCCCTTTCCAGCTTGTTCATGAACGATTTCTGGGGCATTCCTTTGCAAAGCAACGACTCTCACAAATCGTACCGCCCTATCACCGTACTTACATTTCGCTGGAACTATCTTATTGGAGGTTTAAACCCCATTGGCTATCACGTGATCAATATACTCCTACACTGTGCAGTATCAGTATTATTCCTTCATGTTTGTTCAAGAATATTTCATGGTTACATTAGTTCACAAACCAGTTCGTTATCTCTGCTCTGTGGATTATTTTTCGCCCTGCATCCTATTCACACCGAAGCCGTTGCAAATGTCGTTGGCCGTGCAGACGTTCTCTGTGGTTTATTTTATCTTTTGGCATTCTTGTCTTACATCAACTGTTTCCCTAATGGAAACTCCCCTGACGGAAATAAAAGACCATCAAAGTATTCAAAGCTTTGGCTTGCTTCTTGTATCTTTTGGTGCATTTTGTCGCTTTTCAGTAAGGAGCAGGGCGTCACTGTACTCGGAGTTTGTGTTGTGTTTGATGTTTTATTTGTTTGCAAGTTCAACGGAGAACGTTTGTTCAAAGCGTTGGCTTCACCAGGAACGCTTTTTAGACCATGTCCCAAGTGGATATCACGTCTGATTGAAAGACTTTCAATCATTGCCTTTGCAGCAGTAATTCTGCTTTATTTAAGAATAGTCATGATTTCTGGTGGTTTTGCGGTCTCTTTCACTGAGTCTGACAATCCAACGTTATTTCACCCTGACCTTTGGACTCGCTTTAGAACCTACACTTATTTGTGTGCACTGAACGCGCGTCATCTTCTGTGTCCGAACATTCTTTGTTATGATTGGTCCATGGACAGCATATCCCGGATTGAGTCCTGGTGGGACATGCGCAATGTGGAAACGCTTGTCTTCACTCAGATCATGGCATGCTTGTGTCTTTACGGTTTAAAGCCTTCAAGCAAGTCCGCTTTACCGCCTGACGAGTCTATCCAGTGCGTTTTGAAATCTGTAACGTTAGATTCCAATCAAAATACATTTGATAATCACAAAACCTGCAAGACAAAAGAACCTTACCATGCAGGAGAAAAATGGGATGAATTTAACGCCATTCAAAGAAAGCGAGTTGTGCTATTGACGCTTAGTATGATGATAATACCATTTTTACCCGCGTCTAACCTCTTCTTCCCCGTTGGGTTTGTGGTTGCTGAGCGCATTCTCTACATTCCAAGCATGGGATTCTGTATTCTTGTTCCATTTGGAATTTCAATCTTGTTTAGACAGACTTCGAAAGAATCGATATCCTCAACACAAGAGAACTTCAAAGACAACCATGCTGCAAACGAAACTTCAGTCACATCAGAAAGATGGACTTTTGGTGTCAACACCGTGGGAAGGATCATCATCTACAATTTGCTGGTAATCTTTGTCTTCAAAACAGTTCACCGTAATTCCGAGTGGCTGAGCAAAGAGAGACTGGCAAGATCTGGACTGACAGTGAACCCTACAAATGCTAAGATTCACGTCACCTTAGGGAATGTTCTGGCAAAAAAGGGCCTATTGTCATGTGAAAAACACTACCGTCAAGCCTTGCGACTGAGACCGCATTACGTCACTGCCTGGGAAAACCTCGGTCTGGTGCTTCTTAACACAGGTCGAGCTAAGGAAGCGGAGCAGTGCTACTTGAAGGCGCTGTCAATCAAACCTGACAGTGCAGATGGTCACATTAATCTCGCACACCTGTTAAGGGTGACGGGCAGGTTACTTGAAGCTGATACTCAATATCAGAAGGCTCTGTCCCTCAGACCGAATCATCCACAGCTTAATTACTTCCACGGTGTTGTATTGGAAAAACTCGGCAAAATCAAGAAAGCTGAAGAGAAGTACATGAAGACAGCAAAATTAAACCCATCAGACGGGATTCCGTTCTTGTCGCTTGGAAAAATGTTTGCTATTCCCGTTTTGAAGAAACAAGTGAAAAATGGAAAAGAAAAATTGATGAAGAAGGCTGAAGAATTCTTACGGAAAGGATTGCTATTGAAACCTTCGGATACAGCCAGCCGGCTGTTGCTGGTTCAAATTTACCTTCTAAAGAGCAAGTTTGACTTGGCTGAATCAGAGTCCCGCACTGTACTCGAACATGATTCTACCAACAAAGAAGCAGAGTATGTCTTGGGAAGAATTCTAGAGGTCAAAGGTTTACTGATAGAAGCGAGGAAACATTTCCACCAAGTGGTCAAAACAGATTATCAACACAGCGGCGCTAAAGCTGCGCTGCAAAGATTAGATAAAAAGGTTTAA

Transcript

ANN27069-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5T4D3	Protein O-mannosyl-transferase TMTC4 OS=Homo sapiens OX=9606 GN=TMTC4 PE=1 SV=2
Q8BG19	Protein O-mannosyl-transferase TMTC4 OS=Mus musculus OX=10090 GN=Tmtc4 PE=2 SV=1
Q6ZXV5	Protein O-mannosyl-transferase TMTC3 OS=Homo sapiens OX=9606 GN=TMTC3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000850 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF08409 all species →	TMTC_DUF1736	Protein O-mannosyl-transferase TMTC, DUF1736	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR013618 all species →	Domain	Protein O-mannosyl-transferase TMTC, DUF1736	Interproscan
IPR052384 all species →	Family	O-mannosyl-transferase TMTC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44216 all species →	PROTEIN O-MANNOSYL-TRANSFERASE TMTC2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000030 all species →	Molecular Function	mannosyltransferase activity	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23424	TMTC; protein O-mannosyl-transferase	EC:2.4.1.-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.