Gene detail

Detailed information of ANN27119-RA in Montipora grisea

Genomic Location: Scaffold_582__1_contigs__length_85304:77305...79773
NR annotation: NIP29927.1, leucine--tRNA ligase [Candidatus Dadabacteria bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN27119-RA

ATGAAAAAAGAATACAATCCTGCAAAAATTGAGGAAAAGTGGAGAAAAACATGGGAAGAACTAAATGTTTATGAAGCAGATGAAAACAGCTCAAAAGAAAAATATTATGTTTTAGAAATGTTCCCATACCCGTCGGGAAAAATCCATATTGGACACGTCAGGAATTATACCATCGGCGATGTGGTTTCCAGATACAAAAGGTCTCAAGGATTTAATGTTTTGCACCCGATAGGGTGGGACGCGTTCGGACTACCAGCAGAAAACGCCGCGATTGAAAACGGCATACACCCCGCAAAATGGACCTACCGAAATATTGAGCAGATGAAACAACAGCTTAAAAGGCTGGGTTTTAGCTATGATTGGAGCAGAGAAATTGCAACTTGCGATCCTGACTACTATAAGTGGGAGCAGTGGTTTTTTACAAAACTATATGAAAACGGACTGGTTTATAAAAAAACATCTTATGTAAACTGGGATCCAGTTGATAAAACCGTGTTGGCAAACGAACAAGTGATAGACGGTAAAGGCTGGAGGTCGGGAGCAGTGGTTGAAAGAAAAGAGATTCCTCAATGGTTTTTAAGAATAAGCCGTTATTCTCATCAACTTTTAAGCAATTTAGAAAAACTAAACAGATGGCCTGAAGCTGTAAAAACAATGCAAAAAAATTGGATTGGAAAATCAGAGGGAGTGGAAGTTAAATTTGACCTAAAAACGGACGGAGAGAGTCTGGAAATTTTTACAACGCGCCCGGACACAATTATGGGAGCGACATACCTTGCGGTCGCGCCGGAACATCAACTCGCCAAAAAAGTTGGTGAAACCAATAGAGAAGTTTCCGATTTTATAGCGGAATGCGCAAAATCCACATTCTCCGAGGTGGAGTTAGAAACAATTGAAAAGGAAGGAGTTCCCCTTGGAATTAACGCGGTTCATCCTATAACGGAAGAGGAAATACCCATCTGGACTGCAAACTTTGTGTTAATGAGCTACGGAACCGGGGCAGTGATGTCTGTTCCGGGTCACGACCAAAGGGATTGGGAATTTGCCAAAAAATACGGTATTCCGATAAAACAGGTAGTTTTTCCTGAAGACGGGGGAGAGACGTCTATTGAAAATGGCGCTTTTGTTGACAAGGGCATACTATTAAATTCGGGCATTTTTGATAATTTAACTTCCGAAGAAGCGTTTGAGAAAATCGCCGAATACCTAGAAACCAAAGACAAAGGAGCAAAAAAGGTAAATTACCGCTTGAGAGATTGGGGAATCTCACGGCAACGTTATTGGGGTGCTCCCATACCGATCGTTTACTGCGTAAACGGCGGTTGCGGGGAAGTTACCGTTCCTTTAGAACAACTCCCCGTTGAACTTCCGTCCGATATTGAAATTAAAGAAAAGGAGATACCGTCCCTTTCCAAGTTAGATGACTTCATTAACACAAAATGTCCAAAATGCGGGGACGACGCCAAGAGGGAAACGGACACTATGGACACTTTTGTTGAGTCGTCTTGGTATTTTCTGAGATATGCTTCGCCTAATTACAGCGAGGGAATGTTTAATAAAAAAAATGTGGATTACTGGTTGCCCGTAGATCAGTATATAGGGGGAATAGAACACGCCATATTACACCTGTTATATTCCAGATTTTTCACCAAAGCACTAAGGGACACTAAACAAATTGAGTTGGACGAACCTTTTAACAACCTTCTTACACAGGGAATGGTAACGAAAGACGGCGCAAAGATGTCAAAATCACAGGGGAACGTCGTTGACCCGGATGATATGATTAAAAAATACGGCGCCGACGCCGTGAGAATTTTCATGCTCTTTGCCGCGCCAGTTCAGAAAGACCTTGAATGGAGTAATCAAGGAATTGAAGGCTCTTACAGATTTCTTAACAGAGTGTGGCGACTTGTTACGGACTCCATAGAAAAAACCGAAGGTATAAATGGTTTAGAATTAAACGAAAGTGATTTAACTAAAAACTCCAAAACTCTCCTTCTAAAAACAAACCAGACAATAAAGAAAGTAACCGAAGATATAGAAAAATTTCAGTTTAACACCGCTATTGCGGCTATTATGGAACTTCTAAATGAAATCTCAAAGTATAGAGTGGAAAACAACCGAGATAGCCGTGTATTAAACGACTCGTTGAAAACCACAGTTAGATTGTTATACCCGATGGCTCCCCATATAGCGCAGGAGCTTTGGGAACTACTTGGAAACGACGAAAGTTTAATTGATAAAAAGTGGATTGAATATAAAAAGGAGTACCTGAAAACGGATGAAATAAAGATAGTCGTTCAGATAAATGGTAAAGTTCGGTCACAGTTTACGATAAATTCGTCCGCTGATGAAGAAACAATTAAAGAGGTAGCATTAAGCGGGGAAAAAGTAAAAAGTTATATAGGTGAAAACGAAATCAGAAAAGTTATATATGTGCCTAAAAAACTTATCAATATCGTAATTTAA

Transcript

ANN27119-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3J7S8	Leucine--tRNA ligase OS=Nitrosococcus oceani (strain ATCC 19707 / BCRC 17464 / JCM 30415 / NCIMB 11848 / C-107) OX=323261 GN=leuS PE=3 SV=1
B8GV13	Leucine--tRNA ligase OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=leuS PE=3 SV=1
A1WYZ7	Leucine--tRNA ligase OS=Halorhodospira halophila (strain DSM 244 / SL1) OX=349124 GN=leuS PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012531 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13603 all species →	tRNA-synt_1_2	Leucyl-tRNA synthetase, editing domain	Domain	Interproscan
PF08264 all species →	Anticodon_1	Anticodon-binding domain of tRNA ligase	Domain	Interproscan
PF09334 all species →	tRNA-synt_1g	tRNA synthetases class I (M)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002302 all species →	Family	Leucine-tRNA ligase	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR025709 all species →	Domain	Leucyl-tRNA synthetase, editing domain	Interproscan
IPR009008 all species →	Homologous_superfamily	Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	Interproscan
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR013155 all species →	Domain	Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding	Interproscan
IPR015413 all species →	Domain	Methionyl/Leucyl tRNA synthetase	Interproscan
IPR009080 all species →	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43740 all species →	LEUCYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004823 all species →	Molecular Function	leucine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006429 all species →	Biological Process	leucyl-tRNA aminoacylation	Interproscan
GO:0002161 all species →	Molecular Function	aminoacyl-tRNA editing activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01869	LARS, leuS; leucyl-tRNA synthetase	EC:6.1.1.4	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.