Genomic Location: Scaffold_277__1_contigs__length_125908:92592...94352
NR annotation: MCG8355783.1, membrane protein insertase YidC [Kiloniellales bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN27183-RA |
| Transcript |
| ANN27183-RA |
| Protein |
| ANN27183-RA |
| UniProt accession | Description |
|---|---|
| B2IDV5 | Membrane protein insertase YidC OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIMB 8712) OX=395963 GN=yidC PE=3 SV=1 |
| B1Z8E7 | Membrane protein insertase YidC OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) OX=441620 GN=yidC PE=3 SV=1 |
| A9W590 | Membrane protein insertase YidC OS=Methylorubrum extorquens (strain PA1) OX=419610 GN=yidC PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0019241 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14849 all species → | YidC_periplas | YidC periplasmic domain | Domain | Interproscan |
| PF02096 all species → | 60KD_IMP | 60Kd inner membrane protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR028053 all species → | Domain | Membrane insertase YidC, N-terminal | Interproscan |
| IPR001708 all species → | Family | Membrane insertase YidC/ALB3/OXA1/COX18 | Interproscan |
| IPR047196 all species → | Domain | Membrane insertase YidC/ALB, C-terminal | Interproscan |
| IPR028055 all species → | Domain | Membrane insertase YidC/Oxa/ALB, C-terminal | Interproscan |
| IPR019998 all species → | Family | Membrane insertase YidC | Interproscan |
| IPR038221 all species → | Homologous_superfamily | YidC, periplasmic domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12428 all species → | OXA1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0032977 all species → | Molecular Function | membrane insertase activity | Interproscan |
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0051205 all species → | Biological Process | protein insertion into membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03217 | yidC, spoIIIJ, OXA1, ccfA; YidC/Oxa1 family membrane protein insertase | - | Secretion system | ko02044 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |