Detailed information of ANN27189-RA in Montipora grisea

Genomic Location: Scaffold_219__1_contigs__length_143444:56347...59091
NR annotation: MCG8361117.1, type I DNA topoisomerase [Kiloniellales bacterium]
Species Montipora grisea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q4UM42DNA topoisomerase 1 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=topA PE=3 SV=1
Q1RIM1DNA topoisomerase 1 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=topA PE=3 SV=1
Q92IH1DNA topoisomerase 1 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=topA PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0012429 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01396
all species →		zf-C4_TopoisomTopoisomerase DNA binding C4 zinc fingerDomainInterproscan
PF13368
all species →		Toprim_C_rptTopoisomerase C-terminal repeatDomainInterproscan
PF01751
all species →		ToprimToprim domainFamilyInterproscan
PF01131
all species →		Topoisom_bacDNA topoisomeraseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013497
all species →		DomainDNA topoisomerase, type IA, centralInterproscan
IPR013498
all species →		DomainDNA topoisomerase, type IA, zn fingerInterproscan
IPR006171
all species →		DomainTOPRIM domainInterproscan
IPR023405
all species →		Homologous_superfamilyDNA topoisomerase, type IA, core domainInterproscan
IPR003601
all species →		DomainDNA topoisomerase, type IA, domain 2Interproscan
IPR028612
all species →		FamilyDNA topoisomerase I, type IAInterproscan
IPR025589
all species →		RepeatTopoisomerase C-terminal repeatInterproscan
IPR005733
all species →		FamilyDNA topoisomerase I, bacterial-typeInterproscan
IPR034149
all species →		DomainDNA topoisomerase 1, TOPRIM domainInterproscan
IPR013826
all species →		Homologous_superfamilyDNA topoisomerase, type IA, central region, subdomain 3Interproscan
IPR000380
all species →		FamilyDNA topoisomerase, type IAInterproscan
IPR023406
all species →		Active_siteDNA topoisomerase, type IA, active siteInterproscan
IPR003602
all species →		DomainDNA topoisomerase, type IA, DNA-binding domainInterproscan
IPR013824
all species →		Homologous_superfamilyDNA topoisomerase, type IA, central region, subdomain 1Interproscan
IPR013825
all species →		Homologous_superfamilyDNA topoisomerase, type IA, central region, subdomain 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42785
all species →		DNA TOPOISOMERASE, TYPE IA, COREInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003916
all species →		Molecular FunctionDNA topoisomerase activityInterproscan
GO:0006265
all species →		Biological ProcessDNA topological changeInterproscan
GO:0005694
all species →		Cellular ComponentchromosomeInterproscan
GO:0003917
all species →		Molecular FunctionDNA topoisomerase type I (single strand cut, ATP-independent) activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03168topA; DNA topoisomerase IEC:5.6.2.1
DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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