Gene detail

Detailed information of ANN27202-RA in Leptoseris scabra

Genomic Location: Scaffold_13__1_contigs__length_39802057:15437495...15442543
NR annotation: CAH3172259.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W6D8	Homeobox protein BarH-like 1 (Fragment) OS=Gallus gallus OX=9031 GN=BARX1 PE=2 SV=1
Q503F2	Homeobox protein BarH-like 1 OS=Danio rerio OX=7955 GN=barx1 PE=2 SV=2
Q9DED6	Homeobox protein BarH-like 1b OS=Gallus gallus OX=9031 GN=BARX1B PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000082 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR050460 all species →	Family	Distal-less homeobox transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24327 all species →	HOMEOBOX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN27202-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.