Gene detail

Detailed information of ANN27204-RA in Leptoseris scabra

Genomic Location: Scaffold_13__1_contigs__length_39802057:15452155...15475027
NR annotation: CAH3162383.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN27204-RA

ATGGAACCTAGGGTGCTTACCATTTACATGGAAAACCTGGAAATTCCAGTTGGAAAATCAAATGATGGGGCTGTGACCCTTCCAAGTCCATTGGAATTATTCCAGCAAGGGAGAACTTATACTATTAACTGTCAGATAACAGGAGGAGAAACATTTGTTGGTTGGGAAACGCCAGGCATACAAAGTGAGACCATCACACTGGCCACTACAGGAAGAAGAGAAGTTGTTCAGACTGGTGACAACTATGGACTAAAAATAACAGATGTCATAGCAAGTGATGGTGGCGTGTATAGATGTGTTGGTTCATTGGAATCAAAAGAATTCACGGCTAATGTTGACATCAATCTAAACATACAGAACGAGCAAACTCTGCACCTGGGTCGAACAGAAACGTTGGTCCTGGGTGTCTCTGCCTATCCTGCACTTACATACACGTGGACAAAGGATGGAAAACCAGTTTCATTTGATGCACGCCGAACTCTAAATGGACGCACTGGGTCTATAACCTTCAGCCCTGTTCAACTGCCTGACCAAGGAAACTACACCTGCAATGTTGATAGTGATGCATTGTCACCTCACCAGTTTGACCCCATTAGCGTCCACGTTATTGGCATGAAAATGAGAACCCTGAATCTCACTACGTCGCACCCAAAAATGTCCTTACTAAAATCTTTCACCCCAAAACAGTCACCACAAATTTATTGCTCCAGAGTGGGCGAGCAGCAACATAATCTGAATTCAAGAAAACCGATTAAAGGAAAATATGGATCGCGTCTCCAACGGAACATGAAAAGAAGAGGTGGGAAACGTGAAGGCGCCGGGCGGAAGAAATCGCCTACGTTGACTAAAATAACGAGAGAAATCAATCAAAAACATTGGAGAACGAATCACCATTATATATATTTGGAAAAGTACACTTTCTCAACCTGGCGAAAGGTTCGTGCGGTGGGAATCTTCGTAAACGATTCGAACTACGCGTCATGGCTGCTTGGTTTGGAGCTCAGACGAAGACAAGCTTCGGTACACAGTCGATTATCTCCTCGACAAGGAAAATCTCCAGTAGAACCTCATTTTCTACGGGTCGAGCAAGCGTTCTTGCAACGACATGGAAATAAACTTATACATGTGCATTTGCTGATTCCATTCACAGACAGTCCTGTAATCGACAAGTACCAAGGAGATCCTGTAAGGCGCAGACTCACGCAAGGATACAATACAACATTTCACTGTAAAATCAAGTCTGGAGCGCCTTTTCCAACAATAGAGTTTTGGTATGGATGGACAGAAAAAGTCAAGAAGGTTGATCAAATATATACCCCAAGGTACTCCCACCCAACTGCGGAAGAATGGACAATTACTGGCATTACAACCGGGGACAAAGGCAAGTTCAGGTGCATTGCAGAAAACGTCGCTGGACAAGATGACATGAAGATTGAGATCACGGAAGTAGACATACCTCCAGAAATTGATCCGCCTTTGACAGACGTTGTGGTAAATGAAGGTGTTGAACGTGTCTTAGACTGTAAAGTGACAGGCTTACCAGCTCCAACAGTGGAATGGTTTGACCAAAATGGTGTTCGTGTTCCTGATCAATGGACTGCAACGGAAGGAGTCAAGATTGTTCAGAAAATCAGGTTTACAAATGTCCAATGGCAAAACAGTGGAAAGTACACCTGCCGAGCCAGGAATGGTGCCCTGGATGGTGACGAGAAGGTCATTGTGGTGGAACAGACAATAAGCCTTAATGTCAACTCACCACCCAAACTCCTCCCATCACCAAATCCAGTCTACTCTTTTATGGGAAACTGGAAACCTACGATCATCTTATGTAAATTCTCTGGATTCCCTGCACCATTGGTAAAAATGGTCAACGAAAATGGAACAGAGGTTGCGAGTGGAAACGGATCTGCTTCCTTCACTATTCAAAATACTGATTCTGAAGATGTCTTTGGGAACTACAACTGCTCAGCAGTTAATAATTTTGGAAATGACGGTGTTTTGTTGGAGTTGAAGGTCGCTGTTGTTCCCGGCCCACCACGTCAAGTGTTCGCCAACACAACTTGCAAAGATGTTACACTGAAATGGGACTATCCTGAGTCTGATGGAGGAATGGTCATTACAAACTATGTCATAAGAGTTCTTGACGATTCCATGCGAACAGTGCATCAAGAGACGGTCGCTGGAAATTTACGTGAAGCAGACATCAACTACAATAACTTTACGGCAGAAACAAAGTATGGCGTGGAACTCATGGCAAGAAATGACGTTGGTTATGGGAAAAAGGAAAAAATTTCTGCCACAACAAAAAAATACTGCGTGCCTGGAAAACCAACAATTACCAACACTGGAGATGAAGTTGACTCCACCTTCATTTTAACCTGGTTAAAGCCAAACTATGATGGTTTAGACAGCATCATCAAATACAAAGTGGAATGGAGGAAGAAGCCAATTACAGATGCTAGTGTATTTTTTGATGAAAAAAACATCGATGCAACCCAACTCACAGTAAATAATCTCGAGGGTGGCGCAGAGTACGAATTCAAGGTGTTTGCTGAGAACGGAGCCGGTTTTAGCGAGCCTGACACCATGACATTCAGAGTGAGGAAGGGGAGTGGTAAGTTTTATGCTACATTTGATGTAGTACATTTTCATGCATCAAATACCTGGAAACCTTTCCAACCCACTTCAACTCCCACTTCAGCCAAGGTCACTGAACCTCGGCCAGCAACTGTAGAATACTCTACTGGGGAATCAACCAAACTAACCACAACAGCTGCAAATGAACCCGAAGTTGGAGCTCGCACAGAAGCCGGACTCGGACCAGGAGCTATCGCGGGCATTGTCATCGCTGTCATTTTAATAGTGCTCATCACTATTGACCTCTTCTGTTGCTTCTTCAACTCGTGTGGCGTCATCTTTTGTTGCCACCAGGCCCTTTGCGGTGGAGGCGGCTCGGGGAAAGACGATTACAAAGATGGCAAGGCCACGGAGATGGAAAAGTAA

Transcript

ANN27204-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P13596	Neural cell adhesion molecule 1 OS=Rattus norvegicus OX=10116 GN=Ncam1 PE=1 SV=1
P13595	Neural cell adhesion molecule 1 OS=Mus musculus OX=10090 GN=Ncam1 PE=1 SV=3
P31836	Neural cell adhesion molecule 1 OS=Bos taurus OX=9913 GN=NCAM1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000948 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR050964 all species →	Family	Striated Muscle Structural and Regulatory Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13817 all species →	TITIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN27204-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.