Gene detail

Detailed information of ANN27238-RA in Leptoseris scabra

Genomic Location: Scaffold_13__1_contigs__length_39802057:17919472...17922768
NR annotation: XP_044180363.1, uncharacterized protein LOC114947809 [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN27238-RA

ATGGCTTTTCAGCTAAGCAGCATCGCTGTTTTCACCGCGCTGTTGTACTTTTCAACCTGTGGATCCCAACCAACAAAGCCCTCCAAACATGGCGAGATCTACCGCGCTAAAAGTGAGATCGACTCGCTGATTTTCAAGTTGACTCTGGATTTGAACACCTTCAACGAAAAGAAAAATCTTGCCGCAACAATGCAGAAAGACGCCAACAAATTGGCTCGAATCGCCGAAGAAGAAATCGCCTTGTTGAAACCAGTTCAGCGCCTTCTGGAAAAACTTGCAAAAGGAAACACTTCGCATGGATATCCGAGCTGTATGGCGGAACGGAGAGGAAAAATACAAGTACGAATTAAAGCGACAGGATCCTCTCTGCCTAAACACTACACTATAGCTGTAACAGTTAATCACCGAGAACTGATAGATCGTGGATTAACACGTGACAATGGTGATGACTTCCACGTCTATTACCATGACAACGGACAGCGCCCCGTTCAAGTTGACCGCGTCATTAGCGGCCTGGGAACAAAGTCTGCCACTGTCCAGTTCAGACTGCAGGCTCCTATCTCAGCCAACACTGTTGATGATTCCTCTTATTCCTTAGTGTTTGGTGCTGCGGTCAGCGGCAGTGCCATGGATAATCCTGAAAAAGTGTTCGCCTTCTATGACGATTTCTCGAGTTCAACACTGAAAAAAGAATGGGTGAAAACCTGGGGAAAATGGAGCGTGCAAAACGGACGATTGCTGGGGAATACGATGCAGACTAGAAATCTGGGCAAAGGTCATCTTGAGGTTGGACTATATATTCGCTCAGGTTTTCACTGGAAAGACGTCGAAGTAGAGCTTGACTTGATGGAGACGTCGGGGAACAAATATACGGCAACTGGACCATTTCTGCGCTTAAGTAATGTGAGCCCCAGCAAAACTACAGGGTGGTGGCTGCAATACTACAGGGGCAGCCCCAACGAGTGTTACTTAAGGCCCCAAGCCAACAACAGAGATGGTGGATGGAAATACAGAGGAAAGTTACCCACAGCCTTTACATTCAACAAGTGGTTTCACTTCAAATATCGAGTGCTGGGAGAAAGATTCTGGCAGTGGGCGAACGGAAAACTTGTACACGACAACCTGCACGTGGACAAGGAGTGGAAAATAACTGCAGGCACCCTAGGGCTGGGATGTCACAGGTCTCCGCACAACTGCAAAACACTTTATGACAACATCAAGGTAACATTTCTGGTTGCCACTGCCCCAAAGATCACCCTGGGACGGATTCAACCTTTCATTCCTACCCAAAGTTCTCTCCTGGGTGAAAAGAATCTTCCTGCTGACTCGTGTAAGCAGATCCATGATGCAAGTCTCGGCAACAACAAACCACGCGCCAAGAATGGCGTTTATTGGATCAAGACAGACCTCCAAGGAAGCTCAGCAGTGCAGACTTACTGCGACATGAAAAATGGCGGCTGGACTCTCGTGGGCAAAATCAGCGGAAGAGTGGGCAACATTTACAACAAATGGCTGGTGTCTTACCACAACACTGGAGCGCTGAAGACCTCAAAAATCACAAAACGCAAACAGTTTGTCTGCATTGACGCACGCAGTTTGGCAGTAGAGGAGGCGTCCATGGTTCTGCTGTCCAGCGGTGAGAGAGTGGATGGTTTGGGGAGCAAGTGGGTCATGTGGCGGTTGCCTGGTGACAGAGAAAAGGCCTCGTTTTGGAAACATTCTGTTGGATCATCAGCTGTCAAGGCGGCTGTACAGACACCTGTTATGGTGTATGCTTGGAATGGAAACAAAAAGATTTGCTACCAGAACAAGTTCGGGATAAGGCCCTATGTTAAACACGGAGGATCATATCCTTATGCCTCATTCAACACAGCTGGTTATGTCTCCACAAACGACTACTGTATGGGTGTGGGGGTTATGAAAAAAGGCTCCACTGCGCATGGCTGGTCACAGGGTGGCATTGGGTACGACAGTCCAAGCAGCGATTCTGATTGGCCAAACAGATCATACTCGCACCAGTCCGCGCACTTGACGGTCTGGCTTAAGTAG

Transcript

ANN27238-RA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001264 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06439 all species →	3keto-disac_hyd	3-keto-disaccharide hydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010496 all species →	Domain	3-keto-disaccharide hydrolase	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16146 all species →	INTELECTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0070492 all species →	Molecular Function	oligosaccharide binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN27238-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.