Gene detail

Detailed information of ANN27280-RA in Leptoseris scabra

Genomic Location: Scaffold_13__1_contigs__length_39802057:18516586...18552405
NR annotation: CAH3106905.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN27280-RA

ATGCCAACCGATCTCAGCCATCAAGCTCCTCTTAGTCCCGTCTCTACTCCACCAGCATTCACTCCACCACATGAGCGCAATCCCATGCTGTGTCACGACGTTTCTCCTACACTACCCACCGCATCATTGCCTTGCATCTCCCCATCCATGTACGCGAATGAATTTGCAGAACTAGAGGAGCAAATTGGACGAGAGCAACGTGAACGCTTTCGACGCAGGTATGAGAATGGTTTTGACCTGCAGTCAGACGGATTGTATAATAGATGGAAGATGCTGAGGACAAAATTAGACACCCAAGTGATTGAAAGTGGCGGTAATTGTCCTTGCAATGACGCGTGTGATTGCTCTTGTCGAGGTGTTGGTTTCTGCGATTGTGTTGGTTCTCTTGCTTGCTCGGCGCTGGCTTCTCTCGGGGCAAGATCTCTTCCAAACACCAGCACTAGCACTACAGTCGCCCCTGGCCATTCTCTTGAAGGTGCAGCAACTTACTGCTCTCCTCCAGGCCCACCAAAGGAGTACAGCATATCCACTCCAACCGGTGAAGTAGTTATTGACCAGGATCTTTGCTCCATTATGCTTAAGCCAGCTACAGTCTCCCGAGGTGGAGGCAAAAGGCGAAGGCTGAGCCTAGACCCCGGTAATAAGTGCATTACCGGGGACATTTTCCTTACGGCTGTGCGCGCAGAGAATGACAGAAAAGAAAAAGAAAAAGAAGAAAAAGAAAGAAAGAAACAAGAAAGGGCCAGGTTAGCTGAAGAAAAAAAGAAAAAGGCTGAAGAAAAGAAGAAAAAAATACAAGAAAAAAAGGAAGCAAACAAGGAAAAAAGAGAGGAAAAGCAGCTAAAAGATCAGAAAGCAAAGAAGAAAACTGCAATAAAGAAGAAGAAGAATAAAAAGTTCACGATTGACAAACTGTTGGAACAAACATCCTACACCTGCCAGTCGTGCAAGGCACAGTATGTTGAAGACGACCCCTATGAATGGGTAGAGTGCGATTATTGCGACTCATGGTTTCATGTGAAATGTACAGATTTACCTGTACTTGACGAACTAGATCAAAATATGAAGCTGCTCACCAAACAGGGTATAATCAAGTCACAAACAGAGTGTGCACCAAACAATGGCTACTTTCTTATTCCTCTTTATGACAAGGGGACGTTTGTTTTAAAGATTGAGCCTCCAGTTGGCTGGAGTTTTGATCCAAGTAGTGTTGAGTTGAACATTGATGGTACCACAGACAAATGCAGCAAAGGAGAAGACATCAACTTCATATTTACAGGATTTACGCTCTCCGGAAAGGTGATCAGTAAAGGTAGAGAAGTTGGACCAGCTGGAGTAGAAATAACTCTTCGTGAAACCTCAGGTGACCAGGAAAGGAAAACAGTTACAGCAGAGGGAGGATATTTTACTCGTGTAATGCCTGGAACATACAAAGTGAAGTCATCACATGCCTCGTGGAGCTTTGAAAATGCTGAAACAGAAGTTGTAGTGGAGTCTGGTAATGTCAATGTTATGGACAAGATGATAGTGTCAGGATATGATGTCAAAGGTCATGTGTTGAGTGATGGTGAACCTATTCAAGATGTAGGTTTTCTTCTGTTCTCTAAATCTGTTACACAGAAGAACTTGCCAGGTTGTGAAGAGATCCCTAGTGATGTGGTAGACATTATTAAGAAGAAGACTGAAGTTGATACGCCATTGTGCCGTGTCAAGTCTGGCGTGGACGGCCTGTTTGTGTTTCCAAGCGTGCCCAGTGGAGAGTATACCTTGGTTCCTTATTACCAAGGGGAACTAATAACATTTGATGTGGTTCCGTCTAAACTGACCTTTTCTGTTAATTACAAGAGTGTTGTACTAAAGACACCATTTCAAGTACATGGATTTTCAGTCAGTGGTCAAATCCTTACACCAGAGGGCCAAGGTATTGGAGGTGTCAGCATTTCTGCTGGTGAAGGGCTTAGCGCAACAACCACTGCTGAAGGTGTTTATGTATTAAACAACGTCACAGCCGGTGGATACACTATTCAGGCAAATAAAGAGAACTACTTCTTTCATCCAGTAAAAGTCCAAGTAACACCTAACACACCTAGACTGCCTGTCATCACGCCATTTTCGTATCACTTGTGTGGAAAACTTAAGTTTGATGAGTTCCCACCAGGAGTTAGTCAGTTGAAAGGGCGTAAAATGATTCTACAGACAGAGGGTGCATCGATCGCAACAAGATCAATGTCTACCTCAGTTGATGCTAATGGTGACTTCTGCTTCAAAGTAGCAGCAGGAATTCATACCATTCAGCCAGTGATAACATTACCAGAAGTCACTGCTGGTCTGGCATTAACACCCAAGGAACAAGTAGTGACAGTGACGTCAAGCCCTGTTCTTGGTATTACATTCTCACAGTTCAGAGCCACAGTAGCTGGAACTGTCAAATGTATCGATGGTTCATGTGCTGGTGTGTCTGTGTCTCTTCAATCATTAACAAATCCAAATTTACCCAAAGCTGACACAAGGGTGACTGGTAGTTCTTTCACCTTTAAAGATGTTTTTCCAGGAACATATAGAGCGACAGTGGTGGAGGAGTCCTGGTGCTGGGAAAATGAAACTGTAGAATTTCAAGTGTCAGAAACAGATGTCAATGATCTACAGTTCATCCAATCAGGGTACATCTTAAAATGCATCCTGTCACATAATATTACATTGTTTTTCTCGCGGGAATCTGGTAAAGAGAACGTGGACTTCTTTGACCTTCAGAAAGGCACCAATAAATTTTGTTTGAAGGAGCCAGGAGTTTACAACCTGATGCCTCGATCATGCCATCAGTTTGATCAAGATGTTTTCATTTATAACACCTCTGCTCCATCTGTCCTAACATTGACAGCTGTCAAGCATTTGCTTTCTGGAGTCATAAAAACCCTGACAAAAACAGATGATATCAAAGTCAACATCAGGTCATTGAAGTCCAAGGAGATGACGTCCATTGGACCACTGAAACTGGAAACACCCAACAAAGAGAAAGAAGGAGACGTTAATAACAGTGAAGTTAAAGAGTTGAAGCAGGAGTTGTTATACAACTTTTCACACTGGGGAAGGCGTGGCGAGGAATTTGAGATCACTCCAATGTCATCCGAGTTGCTGTTTTACCCTCCAAGTAGAGTTGTGACCATCTCTGATGACTGCCCAGCAGCTTGGGTCGAATTTGAAGGCAGACAAGGTGTGTTCATTGAAGGCCAAGTGAATCCGCCCTTGAGCGGTGTGGAGATTCTCATTACCTCAGGCGAAAAGCACCCCATGGCAGACATCAAGGTGCAAACAGACGAACAAGGAAAATATCGAGTGGGGCCTCTTCACGGCGGCATCGAGTATTCTTTGACTGCAAGTAAAGCTGGTTTTATACTCAGTCCTCTGGTTGACAAGAAAGGACATTTTAAAGCGCAGAAACTGGGACAAATCAAGATACTGGTGACGGATGATGATGGCCAACCTCTATCAGCAGTTCTTTTGTCGCTCAGTGCTGGACAGTTCCGAAGCAATAATCTTACGCTGGATAATGGCACCATGATCTTCCCTAATTTGGGACCGGGACAGTACTTTTTCCGTCCGATGTTGAAGGAATACACATTCTCGCCTGCTTCACAGATGATTGATGTGGGTGAGGGCTCGACTGTTCAGCTACAAGTGAAAGGGAAAAGAGTTGCATTCAGCTGTTTTGGTGTCGTCTCATCACTTAATGGCGAACCCGAAAAAAGCATAGCAGTCGAGGCTGTTGGGCTACAAAGCTGCGAATCTTTTCAAGAAGAAACGGTTTCGGATCAAGACGGACAATATCGGCTTCGTGGACTTCAGCCTGGCTGTATGTACAGAGTTCAAGTCAAGATCGGAGAAAGCAATCCACATATCGAGCGGGCCTCGCCATCGTTTATTGACATACAGATATCAGGTTCCGACCTTCAAAATGTAAACATGATAGCTTTCCGCCACGTCAATCAAATTGAGATCACAGGAAATGTAGTTACGGATAGTCAGTTTCTGTCAACGCTCAAGGTGACGTTGTCCCCAGAGAACAATCCCGACAGCCCTGTATTTACCACCCCTGTGGGTGTGTCCAGCTATTTCCAGTTCCCTCCCGTCCCTAATGATGCCCAGGTGTACGTAGTCCGCTTGGTGTCGTCACTCTCCACTGTGAATTATCATTACACTCGGCCTGAATCTACCGTCACTGCTACAGGAGTTAGAGCTCATGTCTCGTTCAATTTTGATCCACAGCCACGTAAACTTGAACAAGAACCCACCCAAGGATCTTTTCTGACGTTGCCGTTGTTAATCCTGCTCATTCTTTTAGCTGTGAACCACAACAAGGTCATTCCAGTTCTTCAACAAGTACCTCAGATGATACAGGGAGTTTCCGCTGACCAAATACAGGCTCAGCTGGAGGACCCTTTTAAGAACAAAAAGAAAACGCAACCAGCACGACGAAGATAA

Transcript

ANN27280-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5JPE7	BOS complex subunit NOMO2 OS=Homo sapiens OX=9606 GN=NOMO2 PE=1 SV=1
P69849	BOS complex subunit NOMO3 OS=Homo sapiens OX=9606 GN=NOMO3 PE=1 SV=2
Q15155	BOS complex subunit NOMO1 OS=Homo sapiens OX=9606 GN=NOMO1 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004649 (this species only)
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051417 all species →	Family	Serine-Aspartate Repeat-Containing	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR013784 all species →	Homologous_superfamily	Carbohydrate-binding-like fold	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23303 all species →	CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26500	NOMO1_2_3; BOS complex subunit NOMO	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.