Gene detail

Detailed information of ANN27576-RA in Montipora grisea

Genomic Location: Scaffold_627__1_contigs__length_82767:13529...15567
NR annotation: CAE7313242.1, lpdG [Symbiodinium pilosum]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN27576-RA

ATGAACTTGCACGAATACCAATCAAAGGGCCTGTTCCGGCAGTACGGGCTTCCGGTGTCTCGCGGCGTCGCCGTCGACAGCGTGGACGAAGCGGTCGAGGCGGCTAGGAGCCTTGGCGGCGAGCAATGGGTCTGCAAAGTGCAGGTGCATGCCGGGGGGCGCGGCAAGGCCGGCGGCGTGCAACTGGTGCGCAGCCTGTCGGATGTCCGTGCGTTTGCGGACCGGTGGATCGGCGCGCGCCTTGTGACCGTCCAAACCGGTGCCGAGGGTGCGCCGGTTGCCAAGATCTTCGTCGAGGAGGCAGCGGCCATCGCACGCGAACTCTATCTCGGCGCCGTCGTCGACCGCAGCAGTCGGCGCGTCGTGGTGATGGCGTCCACCGAAGGCGGCGTGGAAATCGAGCAGGTTGCCGCCGAGACGCCGGAGAAGATCCTCCGGGCGGCCATCGATCCGGCGACGGGTGCGCAGCCGTTCCAAGGCCGGGCGATGGCCTTCGCGCTGGGCTTGACCGGAAAGCGTACTGCGCAGTTCACGGACATCTTCCTCAACCTGTCGCGCCTGTTCCACGAACTCGACTGCGCGTTGGTGGAGGTCAATCCGCTGGTCGTGACCGCCGCCGGCGACATGCACTGCCTGGATGCCAAAATCAACATCGACAACAACGCGCTGTACCGCCAGCCCGAACTGGCGGCGCTGCGCGATTCGTCGCAGGAGGACGAACGCGAGGCGCGCGCCGACGCGTTCGGCCTGAACTACGTCGCCTTGGACGGCAACATCGGCTGCATGGTCAACGGCGCGGGACTGGCGATGGGCACCATGGACCTCGTCAAGCTGCAAGGCGGCAACCCGGCCAATTTCCTTGACGTCGGCGGCGGGGCAACGCAAGAGGCGGTTGCGGAAGCGTTCAAGATCATCCTCTCGGACGCCGCCGTCAAAGCGGTGCTGATCAACATTTTCGGCGGCATCGATCATCGCCGAGGGCATCATCGCGGCGGTCAAGCAAGTCGGCGTGGCGGTGCCGGTGGTCGTTCGGTTCGAGGGCAACAATGCCGCGCAGGGACTCGCCGCATTGGCAAGCAGCGGGCTCGCCATCGACACGGCGGCGTCGTTGCAGGACGCCGCCGACAAGGCCGTGGCCGCCGCGGGAGGCAACGCATGAGCATTCTTGTCGACAGCGACACGACCGTCATCTGCCAAGGGTTCACGGGGTCGCAGGGTACGCTGCACAGCGAGCAGGCGATCGCCTACGGTACCCGGTTGGCGGGTGGCGTCACGCCGGGCAAGGGCGGCACCGTGCATCTCGACCGCCCGGTGTTCGATACCGTTGCGCAGGCGGTGGCGGCGACCGGCGCCACCGCATCGGTGATCTACGTGCCGGCACGGTTCTGCAAGGACTCCATTCTGGAGGCCGCCGATGCCGGCATCGAACTGATCGCATGCATCACCGAAGGTGTTCCGACATTGGACATGCTCGCCGCGAAGCACCGGTTGGATGCAATGGGGGTACGCCTCATCGGACCGAACTGCCCCGGCGTCATTACCCCCGGCGAATGCAAGATCGGCATCATGCCCGGAGACATCCACCTGCCTGGCAAGGTGGGCGTGGTGTCGCGCTCCGGCACCTTGACCTACGAAGCCGTGAAGCAGACCACCGACATGGGCTACGGGCAGTCCACGTGCGTGGGCATCGGCGGCGATCCGATTCCGGGTACCCACTTCCGGGATGTGCTCGGCATGTTCGAGGCAGACCCGGCCACCGAGGCGATCGTCATGGTCGGCGAGATCGGCGGCACCGCGGAGGAAGAAGCGGCGGCCTTCATCGCCCGGCAGGTGACCAAGCCGGTCGTCGCCTACATCGCGGGGGTCACGGCACCGCCCGGCAAGCGCATGGGACATGCGGGAGCAATCATCGCCGGCGGCAAGGGCACGGCCGACGACAAGTACGCGGCCTTGGAAGCCGCCGGCGTGAAGACCGTGCGCAGCTTGGCGGCAATCGGGGCTGGGCTTGCGGAAGCCGCCGGCTGGTAG

Transcript

ANN27576-RA

Protein

Uniprot

Uniprot term	Description
Q51567	Succinate--CoA ligase [ADP-forming] subunit alpha OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=sucD PE=1 SV=2
P0AGF1	Succinate--CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O157:H7 OX=83334 GN=sucD PE=3 SV=2
P0AGF0	Succinate--CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=sucD PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00549	Ligase_CoA	CoA-ligase	Domain	Interproscan
PF08442	ATP-grasp_2	ATP-grasp domain	Domain	Interproscan
PF02629	CoA_binding	CoA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017866	Conserved_site	Succinyl-CoA synthetase, beta subunit, conserved site	Interproscan
IPR005810	Family	Succinyl-CoA ligase, alpha subunit	Interproscan
IPR017440	Active_site	ATP-citrate lyase/succinyl-CoA ligase, active site	Interproscan
IPR005811	Domain	ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain	Interproscan
IPR013815	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR003781	Domain	CoA-binding	Interproscan
IPR005809	Family	Succinate--CoA ligase-like, beta subunit	Interproscan
IPR033847	Conserved_site	ATP-citrate lyase/succinyl-CoA ligase, conserved site	Interproscan
IPR013650	Domain	ATP-grasp fold, succinyl-CoA synthetase-type	Interproscan
IPR016102	Homologous_superfamily	Succinyl-CoA synthetase-like	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR011761	Domain	ATP-grasp fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11117	SUCCINYL-COA LIGASE SUBUNIT ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0004775	Molecular Function	succinate-CoA ligase (ADP-forming) activity	Interproscan
GO:0004776	Molecular Function	succinate-CoA ligase (GDP-forming) activity	Interproscan
GO:0009361	Cellular Component	succinate-CoA ligase complex (ADP-forming)	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01902	sucD; succinyl-CoA synthetase alpha subunit	EC:6.2.1.5	Carbon fixation pathways in prokaryotes	ko00720	deepkoala