Gene detail

Detailed information of ANN27581-RA in Leptoseris scabra

Genomic Location: Scaffold_13__1_contigs__length_39802057:26472474...26478486
NR annotation: XP_027044677.1, uncharacterized protein LOC113672570 [Pocillopora damicornis]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2AJ76	Hemicentin-2 OS=Mus musculus OX=10090 GN=Hmcn2 PE=1 SV=1
O89026	Roundabout homolog 1 OS=Mus musculus OX=10090 GN=Robo1 PE=1 SV=1
Q9Y6N7	Roundabout homolog 1 OS=Homo sapiens OX=9606 GN=ROBO1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13895 all species →	Ig_2	Immunoglobulin domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR000679 all species →	Domain	Zinc finger, GATA-type	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46958 all species →	B-CELL RECEPTOR CD22	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0019903 all species →	Molecular Function	protein phosphatase binding	Interproscan
GO:0030888 all species →	Biological Process	regulation of B cell proliferation	Interproscan
GO:0033691 all species →	Molecular Function	sialic acid binding	Interproscan
GO:0042113 all species →	Biological Process	B cell activation	Interproscan
GO:0042609 all species →	Molecular Function	CD4 receptor binding	Interproscan
GO:0050859 all species →	Biological Process	negative regulation of B cell receptor signaling pathway	Interproscan
GO:0055037 all species →	Cellular Component	recycling endosome	Interproscan
GO:0070062 all species →	Cellular Component	extracellular exosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN27581-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.