Gene detail

Detailed information of ANN27607-RA in Montipora grisea

Genomic Location: Scaffold_105__1_contigs__length_244780:238717...239871
NR annotation: GIX14197.1, MAG: argininosuccinate lyase [Paracoccaceae bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8LL46	Argininosuccinate lyase OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) OX=398580 GN=argH PE=3 SV=1
Q5LXC0	Argininosuccinate lyase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=argH PE=3 SV=1
Q169X5	Argininosuccinate lyase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=argH PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002688 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00206 all species →	Lyase_1	Lyase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000362 all species →	Family	Fumarate lyase family	Interproscan
IPR022761 all species →	Domain	Fumarate lyase, N-terminal	Interproscan
IPR020557 all species →	Conserved_site	Fumarate lyase, conserved site	Interproscan
IPR009049 all species →	Family	Argininosuccinate lyase	Interproscan
IPR024083 all species →	Homologous_superfamily	Fumarase/histidase, N-terminal	Interproscan
IPR008948 all species →	Homologous_superfamily	L-Aspartase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43814 all species →	ARGININOSUCCINATE LYASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004056 all species →	Molecular Function	argininosuccinate lyase activity	Interproscan
GO:0042450 all species →	Biological Process	arginine biosynthetic process via ornithine	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01755	argH, ASL; argininosuccinate lyase	EC:4.3.2.1	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.