Gene detail

Detailed information of ANN27663-RA in Montipora grisea

Genomic Location: Scaffold_1722__1_contigs__length_50640:36527...39112
NR annotation: CAE7828836.1, sdhA [Symbiodinium sp. KB8]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN27663-RA

ATGAACGCTTACGAAATTGTTGACCATTCGTATGATGTTGTGGTAGTCGGCGCCGGCGGCGCCGGACTCCGGGCAACGTTCGGTTGCGTTTCCGCCGGACTTCGCACTGCGTGCATCACCAAGGTGTTTCCAACCCGCAGCCATACCGTTGCCGCCCAGGGTGGGATCAGCGCGGCACTTGGCAACATGAATGACGATGACTGGCGGTGGCATATGTACGATACCGTCAAGGGTTCGGATTGGCTGGGTGATCAGGATTCCATTGAATACATGTGTCGGGAAGCACCAAACGCGGTCGTCGAACTGGAACACTACGGCGTGCCGTTTTCTCGTACTGAAGATGGTCGTATCTATCAACGGGCGTTCGGAGGGATGACGACACATTACGGCGAAGGCCAGGCAATGCGCACCTGTGCAGCAGCGGACAGAACCGGACACGCCATCCTGCATACCCTGTATCAGCAGGCTTTGAAACACAAAGCGGAATTCTATATCGAGCACTTTGCCCTTGACCTTTTAATGGTCGGGGAAGAGTGCCGCGGCGTATTGGCATGGAATCTGGATGAAGGTACCTTGCACCGATTTGAAGCAACGCTCGTCATATTGGCTACTGGTGGTTATGGACGTGCCTACCAGTCAACGACGGCGGCGCATACCTGCACTGGCGACGGCAGTGGCATGGTGCTGCGCGCCGGACTCGCGCTTCAGGATATGGAATTTGTACAGTTTCATCCGACTGGCATTTACGGCTCGGGCTGTCTGATTACGGAAGGCGCTCGTGGAGAAGGAGGCTACCTGACGAACAGCGACGGTGAGCGCTTTATGGAAAGATATGCGCCGAATGCCAAGGATCTCGCATCCCGCGATGTCGTCAGCCGGTCAATGACCATGGAAATCATTGCCGGGCGCGGCATTGGCAAGGATAAGGATCATATATTTCTGCACCTGGAACACCTGGGTCCGGATGTGCTGCAGGAACGATTGCCAGGCATATCTGAAACAGCCAAAATTTTCGCAAACGTTGATGTGACGTCCATGCCCATTCCGGTGATTCCTACCGTGCACTACAACATGGGCGGGATTCCAACCAACTATCACTGCGAAGTCGTAACCCGCAAGCACGACGATGATGACTACGTAATTCCTGGCCTCATGGCCATTGGTGAGGCGGCTTGCGTATCGGTTCATGGGGCGAACCGTCTTGGCTCCAATTCACTGCTCGATCTTGTCGTATTCGGCGCATCGGCGGCGCGTAGAGCCGAGCAGATCATCAAGGAACATGAATCGAAACGTGGTCTGCCCGCTAACATCGAAGACAGGTGTCTCGAACATTTTGATCGATTGCGCTACGGTTCCGGTGCCGTTCCTACTGCTGTAATCAGGGATAAGATGCAGCGTATCATGCAGAATTTTTGTGCTGTTTTTCGAACTGAGGAGATACTAGGTGAAGGGGTGGAGAAGTTAACGGAAGTCTGGCACGACATGAACGACATAAAGGTGACTGATCGATCGATGATCTGGAATACCGACCTTGTCGAAACGCTGGAACTCGACAATCTCCTGCGACAGGCCATGGTGACGATTCACTCGGCATTGAACCGTCGGGAGAGCCGGGGAGCGCACGCCAGGGATGACTATCCCGACCGCGACGACGACACATGGATGAAACACACCCTGTCCTGGCTGAATGACTCCGGCGAAACAATTATCGACTATCGCCCCGTTCATTTATATACTCTGACCGAAGAAATCGATGTAATCGCTCCCAAGGCACGTGTGAGCAAGTTTAGACTTCCCAGAAATTCAAGGATCAAGAAAGGACAGACCTTTAAAAACGGTACATCCTCCGGGAACCTGAAATCGTTCAAAATATATCGATGGGATCCTGACACCGGCGAGTCGCCACGTGTCGATACATACGAACTGGACCTGGACAACTGCGGTCCCATGGTGCTGGATGCGTTGATCAAGATTAAGAACGAAGTCGATGCATCGCTGACTTTTCGAAGATCCTGTCGAGAGGGTATCTGCGGTTCCTGCTCCATGAACATAGACGGGGTAAACACCTTGGCTTGTATCAAGCCGATCAGCGAAATCAAGTCAGATGTGAAAATCTACCCCTTACCACATCAACCGGTGGTTAAGGACCTGGTGCCTGACCTTTCTGATTTTTACCTGCAGTATGCGTCAATCAAACCCTGGATTCAGAACTCGAGTTCTGCGCCGTCAGGACGGGAAAAACTGCAGTCCATTGACGATCGTGCACAGCTTGACGGCTTGTATGAGTGTATTTTGTGCGCCTGCTGTTCGACCAGCTGTCCGAGTTACTGGTGGAACAGTCCAAAATTCCTTGGCCCGGCGGCACTGCTACAGGCGTACCGCTGGATTGCCGATAGTCGGGATGAGGCAGCAGCCACGCGGCTTAACGAACTGCAGGACCCCTTCAGCCTGTATCGATGCCACACGATCATGAACTGCACGAGCGTCTGTCCCAAGCACCTCAATCCCGGAAAGGCCATCGCTGAAATCAAGAAACGAATCGCTCTTAGACATTGA

Transcript

ANN27663-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68XN9	Succinate dehydrogenase flavoprotein subunit OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) OX=257363 GN=sdhA PE=3 SV=1
Q92J97	Succinate dehydrogenase flavoprotein subunit OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=sdhA PE=3 SV=1
Q4UJM1	Succinate dehydrogenase flavoprotein subunit OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=sdhA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003920 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13183 all species →	Fer4_8	4Fe-4S dicluster domain	Domain	Interproscan
PF00890 all species →	FAD_binding_2	FAD binding domain	Family	Interproscan
PF02910 all species →	Succ_DH_flav_C	Fumarate reductase flavoprotein C-term	Domain	Interproscan
PF13085 all species →	Fer2_3	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017896 all species →	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan
IPR003953 all species →	Domain	FAD-dependent oxidoreductase 2, FAD binding domain	Interproscan
IPR036010 all species →	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan
IPR027477 all species →	Homologous_superfamily	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR006058 all species →	Binding_site	2Fe-2S ferredoxin, iron-sulphur binding site	Interproscan
IPR015939 all species →	Domain	Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal	Interproscan
IPR011281 all species →	Family	Succinate dehydrogenase, flavoprotein subunit	Interproscan
IPR030664 all species →	Family	FAD-dependent oxidoreductase SdhA/FrdA/AprA	Interproscan
IPR001041 all species →	Domain	2Fe-2S ferredoxin-type iron-sulfur binding domain	Interproscan
IPR009051 all species →	Homologous_superfamily	Alpha-helical ferredoxin	Interproscan
IPR003952 all species →	Binding_site	Fumarate reductase/succinate dehydrogenase, FAD-binding site	Interproscan
IPR014006 all species →	Family	Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	Interproscan
IPR017900 all species →	Conserved_site	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR025192 all species →	Domain	Succinate dehydogenase/fumarate reductase N-terminal	Interproscan
IPR037099 all species →	Homologous_superfamily	Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily	Interproscan
IPR004489 all species →	Family	Succinate dehydrogenase/fumarate reductase iron-sulphur protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11632 all species →	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0000104 all species →	Molecular Function	succinate dehydrogenase activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0009055 all species →	Molecular Function	electron transfer activity	Interproscan
GO:0009061 all species →	Biological Process	anaerobic respiration	Interproscan
GO:0022900 all species →	Biological Process	electron transport chain	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN27663-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.