Gene detail

Detailed information of ANN27790-RA in Montipora grisea

Genomic Location: Scaffold_349__1_contigs__length_108736:55994...58159
NR annotation: NIP30319.1, sigma-70 family RNA polymerase sigma factor [Candidatus Dadabacteria bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P00449	Superoxide dismutase [Mn] OS=Geobacillus stearothermophilus OX=1422 GN=sodA PE=1 SV=2
P28760	Superoxide dismutase [Mn] OS=Bacillus caldotenax OX=1395 GN=sodA PE=3 SV=2
Q81LW0	Superoxide dismutase [Mn] 1 OS=Bacillus anthracis OX=1392 GN=sodA1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001942 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04539 all species →	Sigma70_r3	Sigma-70 region 3	Family	Interproscan
PF04542 all species →	Sigma70_r2	Sigma-70 region 2	Domain	Interproscan
PF00081 all species →	Sod_Fe_N	Iron/manganese superoxide dismutases, alpha-hairpin domain	Domain	Interproscan
PF02777 all species →	Sod_Fe_C	Iron/manganese superoxide dismutases, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000943 all species →	Domain	RNA polymerase sigma-70	Interproscan
IPR036324 all species →	Homologous_superfamily	Manganese/iron superoxide dismutase, N-terminal domain superfamily	Interproscan
IPR007624 all species →	Domain	RNA polymerase sigma-70 region 3	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR007627 all species →	Domain	RNA polymerase sigma-70 region 2	Interproscan
IPR013325 all species →	Homologous_superfamily	RNA polymerase sigma factor, region 2	Interproscan
IPR019831 all species →	Domain	Manganese/iron superoxide dismutase, N-terminal	Interproscan
IPR013324 all species →	Homologous_superfamily	RNA polymerase sigma factor, region 3/4-like	Interproscan
IPR019832 all species →	Domain	Manganese/iron superoxide dismutase, C-terminal	Interproscan
IPR014284 all species →	Domain	RNA polymerase sigma-70 like domain	Interproscan
IPR036314 all species →	Homologous_superfamily	Manganese/iron superoxide dismutase, C-terminal domain superfamily	Interproscan
IPR019833 all species →	Binding_site	Manganese/iron superoxide dismutase, binding site	Interproscan
IPR001189 all species →	Family	Manganese/iron superoxide dismutase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43595 all species →	37S RIBOSOMAL PROTEIN S26, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0004784 all species →	Molecular Function	superoxide dismutase activity	Interproscan
GO:0006801 all species →	Biological Process	superoxide metabolic process	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03086	rpoD; RNA polymerase primary sigma factor	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.