Detailed information of ANN27790-RA in Montipora grisea

Genomic Location: Scaffold_349__1_contigs__length_108736:55994...58159
NR annotation: NIP30319.1, sigma-70 family RNA polymerase sigma factor [Candidatus Dadabacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P00449Superoxide dismutase [Mn] OS=Geobacillus stearothermophilus OX=1422 GN=sodA PE=1 SV=2
P28760Superoxide dismutase [Mn] OS=Bacillus caldotenax OX=1395 GN=sodA PE=3 SV=2
Q81LW0Superoxide dismutase [Mn] 1 OS=Bacillus anthracis OX=1392 GN=sodA1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04539Sigma70_r3Sigma-70 region 3FamilyInterproscan
PF04542Sigma70_r2Sigma-70 region 2 DomainInterproscan
PF00081Sod_Fe_NIron/manganese superoxide dismutases, alpha-hairpin domainDomainInterproscan
PF02777Sod_Fe_CIron/manganese superoxide dismutases, C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000943DomainRNA polymerase sigma-70Interproscan
IPR036324Homologous_superfamilyManganese/iron superoxide dismutase, N-terminal domain superfamilyInterproscan
IPR007624DomainRNA polymerase sigma-70 region 3Interproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR007627DomainRNA polymerase sigma-70 region 2Interproscan
IPR013325Homologous_superfamilyRNA polymerase sigma factor, region 2Interproscan
IPR019831DomainManganese/iron superoxide dismutase, N-terminalInterproscan
IPR013324Homologous_superfamilyRNA polymerase sigma factor, region 3/4-likeInterproscan
IPR019832DomainManganese/iron superoxide dismutase, C-terminalInterproscan
IPR014284DomainRNA polymerase sigma-70 like domainInterproscan
IPR036314Homologous_superfamilyManganese/iron superoxide dismutase, C-terminal domain superfamilyInterproscan
IPR019833Binding_siteManganese/iron superoxide dismutase, binding siteInterproscan
IPR001189FamilyManganese/iron superoxide dismutaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR4359537S RIBOSOMAL PROTEIN S26, MITOCHONDRIALInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006352Biological ProcessDNA-templated transcription initiationInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0004784Molecular Functionsuperoxide dismutase activityInterproscan
GO:0006801Biological Processsuperoxide metabolic processInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03086rpoD; RNA polymerase primary sigma factor-Transcription machineryko03021deepkoala

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