Gene detail

Detailed information of ANN27811-RA in Montipora grisea

Genomic Location: Scaffold_72__1_contigs__length_349636:194514...196748
NR annotation: RMD63074.1, cysteine--tRNA ligase [Alphaproteobacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN27811-RA

ATGACCAAGCCCGACATGACCAGCCCGAAACTGCAGTTCCACAACACCCTGCCCCGCGCCAAGCAGGACTTCACGCCGCTCGATCCCGGCAATGTCCGCATGTATGTCTGCGGCCCGACGGTCTACGACTTCGCCCATATCGGCAACGCGCGTCCTGTGGTGGTCTTCGACGTGCTGTTCCGCCTGCTGCGCCAGGTCTATGGCCCGGCGCACGTGACCTATGCCCGCAACATCACCGACGTCGAGGACAAGATCATCGTCGCCGCCAAGGCGAGCGGCGAGACCATCGATCAGGTCACCGGCCGCACCACCCAGGCCTTCCACGACGACATGGCGGCGCTCGGCGCGCTGCCGCCCTCGGTCGAGCCGCGTGCCACTCAAACCATTCCCGAGATGATCGCGATCATCGAAACCCTGATCGCCCGTGGCCATGCCTATGCCGCCGAAGGGCATGTGCTCTTCGCAGTCACCTCGGATCCGAACTACGGCCAGCTCTCGCACCGTGACCGTGACGAGATGATCGCCGGCGCCCGGGTCGAGGTCGCGCCCTACAAGCAGGACCCCGCCGACTTCGTACTCTGGAAACCCTCGAGCGACGAGCAGCCGGGCTGGGACAGCCCCTGGGGCCGGGGCCGGCCGGGCTGGCACATCGAATGCTCGGCCATGAGCAAAAAGCACCTCGGCGAAGACTTCGATATTCACGGCGGCGGCCAGGACCTGATCTTTCCGCACCACGAGAACGAGATCGCCCAGTCGCTCTGCGGCACCGACGGCTCGTTCGCGCACACCTGGATGCACAACGGCTACGTCGTGGTCGGTGGCGAGAAGATGTCCAAGTCGCTCGGCAACTTCGTCACCGTGCGCCAGCTCCTGGAGGAGGACGATTGGCCCGGCGAGGGGCACAAGAAGGGCGAGGCGATCCGCCTGACGCTGCTGTCGGCGCACTACCGTCAACCGCTCGACTTCACCCGCGACAAGCTGGCCGAAGCCAAGGCCCAGCTCGATCGCCTTTACGGCGCGCTGCGTCAGGTCGAGGACATCGAATCCGCGCCCGGCGAGCCGCCGGAGACCGTGCGAGCGGCCTTGGCCGACGACCTCAACTCACCCCTGGCCCTGGCCCAGTTGCATGAGATCGGCACGGCGCTCAACAAGGCCGACGATCCAACGACGCGGGCCGCTTTGAAAGCGGACTTGTTGTCGGGGGCCGGCCTGCTGGGGCTGTTGGACAAGGCGCCGGAGACTTGGTTCAAGGGCGAGGGCGACGGCGAGGCCGGTGAGATCGAAGCCCTGATCGAGGCCCGCGCCGCGGCGCGTAAGGCCAGGGACTTCGCCGAAGCGGACCGGATCCGCGACGAGCTCGCGGCCCAGGGAATCGTGTTGGAGGACGGCGCCGGCGGGACGACCTGGAAGCGGGTCGAGCACCAGCAGTTTGGCTCCGAAGGCCTTGACCAGGCCGGTGAACACGATGGCGGCGCCTTGTTCCCGCGCGACCTGTTCGGCGAATGCGCAGTAGGAGACCGCGACCAGGACCGGCCGCAGCCGTTCAAGTTCGGCGGCGCTGGTCTTGGCTTCGCGCAGGTGCAGGCCGCGCAGCTTGGACATCTTGCCGAGCGTCGCCATCATCGAGTCCGACAACGAGAAGGTCGAGGGAATGTCCCGGACCATCAGCATCAGCTTCTCGGCAAGGCCGTCCTTGGTCGTTTCGAAGGCGCGCTCGAACATCGCCATGCCGTCCTGGCTCATCATGGTCTTGAAGCCGATGGTCGAGAGGATGAGCTTCTGGTCGGGGAGACTGCCGGCGACGTAGCTCTCGTTGAGTTTGGTCAGCATCAAGGCGTCGAGTTCCGCCGAGAGCGCGCAGTCCTCGCCCAGCAAGCCGCGCAGCCGTGCGATCGCGGATTCGCTGTCCGGGTCGAAGCGCGGCAGGCGGAGCGGGGCGGTCTTGCCGCGCGAGGTGTGCATCTGATGCTGCTCGACCTGCAGCTTTCGGCTGGCCCGGTCGAAGCCGGCCTTCAGGTCCTTGTGGGCCTGATCCGCGAGGCCGACGAAACCGCGCGACAGAACCTGCCCGAAGTCGTTTTCGTCTACTGGCACCGCTTTTTCCGGGGCTGA

Transcript

ANN27811-RA

Protein

Uniprot

Uniprot term	Description
Q2W7Y5	Cysteine--tRNA ligase OS=Paramagnetospirillum magneticum (strain ATCC 700264 / AMB-1) OX=342108 GN=cysS PE=3 SV=1
Q2RWK2	Cysteine--tRNA ligase OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=cysS PE=3 SV=1
B6ISG4	Cysteine--tRNA ligase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=cysS PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01406	tRNA-synt_1e	tRNA synthetases class I (C) catalytic domain	Family	Interproscan
PF09190	DALR_2	DALR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR032678	Domain	tRNA synthetases class I, catalytic domain	Interproscan
IPR009080	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR015273	Domain	Cysteinyl-tRNA synthetase, class Ia, DALR	Interproscan
IPR015803	Family	Cysteine-tRNA ligase	Interproscan
IPR024909	Family	Cysteinyl-tRNA synthetase/mycothiol ligase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10890	CYSTEINYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0004817	Molecular Function	cysteine-tRNA ligase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006423	Biological Process	cysteinyl-tRNA aminoacylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01883	CARS, cysS; cysteinyl-tRNA synthetase	EC:6.1.1.16	Transfer RNA biogenesis	ko03016	deepkoala