Gene detail

Detailed information of ANN27893-RA in Leptoseris scabra

Genomic Location: Scaffold_13__1_contigs__length_39802057:33656648...33666566
NR annotation: XP_020630443.1, F-box/LRR-repeat protein 18-like [Orbicella faveolata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN27893-RA

ATGGAGTCGCTTCCAGAAGAAGTCCTCTTCATGATATTTCAAAATCTTCATCCTTTAGAACTAATTCCCTTGTCACGAGTAAACAGACGATGGCACGACGTTGCGCTACATCCTCGACTACACAGGTGTTTTAATTTAAAACAGAGGCAACACTTTCCTAGTTGCATGACTATCTGCAAGTACATCAGCACTTTCAAGCATTCCCTGGAGGAACTAGATTTGCGAGAATGCTACTGGTTGAAAGGTGCCTCTCTTTCAAGTGCACTACAAAAGTGCAGGAAATTAAAGTCTCTTAATGTTGTGGGTTGTGATGTTACCAAGAAAACCATTTGCTCTGTTCTAAAACTGAATGAGCATATCAGGACCCTGGAATGGTCAATCACACTTTCTGACTTATACTCCACTGCAGACGCAGTGTCTATTTCATTGCGAGATGATTGCAGGGAATTTGTAGTCCATTTCTGCCGTGAGCTTGTAGATGTCTTTGCAGGATTGGATAGTCTGACAATTCGTTTTCCAGTGCATCCTGGACATTTGAGGAGTGAAATTCCTTTCCTTGTAATTATTAACTTTGGAGTGCCAGTCATTTGCAGTGGGCTTCATTTAAAAAAGTTTAAACTTCAGTGGTTTGAGAATAGAAGAAATTTTAATTGTGTTGAAATCCTTATTGAAGGAAGTGGTTTTCAGTTTCCGAAGTGCTGTAAGAATGGTAGTGAACCCCTTTGTAGTTTAAAGACAATGGCTTTGGGTGCCTTAGCTTACCAGCTTGAATATGGTATGCTGCAGACATTTCTTTTGCCTGATAACCCTTATATACAAGCACCCTTCTGGGGTGATGGTTTCAAGAAGTTGGAGCGTAAAACATCCATAGGCAACATGGACTTAGGAGCCTTGCATCTGCAGGATTCAGCTTGTCTGTCAGCGATTCTTGGTGTGCAATCATTACAATATTTGAACCTTGCTGGATTGAACATCAATGGCCATTTGCTGCAAGTGATTGCAACCACATCACCAAACTTAGAGTGTCTCAATTTACAGGACTGTGTTGGCTGTCTTGAACCTCTTCAAGGACTTAAGTCACTGGCAACATGTTGCCCAAACTTGGCTCAGTTAAACCTGTCTGGAGTACACTACCTAGCCTCAAAAGAAACACCAAATGACTTACTGGAGATCATCTCAAAACTTGCCAATCTTGTCTCTCTCAGTCTCTGTGCATGTTGTTGTGTGCTGGGCTCAAACAGGGAGCAGAGTAGCCACAAGAGTGGCAATGACTTTAGAAGTGATTTACTTAAGAGTAGGAAAAGGGTTTGCCATGGAGACAATGGAAGCTCAAGTTCTGCTGACAATGATTCAACTCCATGGCATGAGCTAAGCAGTGAGGAAGCTTTTGATCGCCTGGCTAAAGCATGCAGTAAAATAACAGAATTTGAGCTCATTAACCCATTGCGTCAAGGTGTCAGCTTTAAAAAGAGCTACTACAAGTCCTCTAATAGGCGTGCTGAGCACCAGGACTGTGGTAAGTGTCTTTTATCAACAAGAGAATATGGCATAATGGGAGCAATTACAAACTGGACAAGTTTACAGAGGCTTACACTCGCAGCACCATTGAAAGGACATAGCTTGAAACTTCTTGTAGCTGTAACACGGAGCTGCCCCAATCTACGCTTCTTATCTCTGGCAGCAGTGGCTAATCTTGGCCACTCAGGCAATGTGATCCTTCTTCAAAATGCACTCTCCTTCTGTCATCAACTGAGGGATTTCAGATTTGAGCAGCCAAAATTCACCATAACAGAATCATTTATGCTGACATTAGGTGAACTGAAACATCTTGAGCGGGTTTGTATCATTGCTAGAAAGGGGGCCATGAAGATGTACGCACAAGCAGTCATCTCGCTATTTGAAAAGTGTTGCAAGCTGTATTATTTTCAAGTGCTCTGTGGCATTACAGCAAAGGCCAGAAAAGCGGTGACAGATTGTGTGACCAAGAGGTTTGAAGAGACACGCCCTGGTCTTGTAGTGTCAGTGTTTCCATTTCGCGAGGATGACATGATACATGTACCCACATCCAAGATTGCCTATTCTATCCCAGTTGTGCATTTCAAAGAAATCTTTCTGTTTGGCACAACAGTTGCAACAAGAGTTCCAGTTTAA

Transcript

ANN27893-RA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003924 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19729 all species →	FBXL18_LRR	F-box/LRR-repeat protein 18, LRR	Repeat	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045627 all species →	Domain	F-box/LRR-repeat protein 18, LRR domain	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16134 all species →	F-BOX/TPR REPEAT PROTEIN POF3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10284	FBXL18; F-box and leucine-rich repeat protein 18	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.