Gene detail

Detailed information of ANN27909-RA in Montipora grisea

Genomic Location: Scaffold_1774__1_contigs__length_50016:13269...15165
NR annotation: WP_008295953.1, protein translocase subunit SecD [Congregibacter litoralis]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HXI1	Protein translocase subunit SecD OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=secD PE=3 SV=1
E9RGS3	Protein translocase subunit SecD OS=Vibrio alginolyticus OX=663 GN=secD PE=1 SV=1
P0AG91	Protein translocase subunit SecD OS=Escherichia coli O157:H7 OX=83334 GN=secD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012921 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13721 all species →	SecD-TM1	SecD export protein N-terminal TM region	Family	Interproscan
PF02355 all species →	SecD_SecF	Protein export membrane protein	Family	Interproscan
PF07549 all species →	Sec_GG	SecD/SecF GG Motif	Motif	Interproscan
PF21760 all species →	SecD_1st	Protein translocase subunit SecDF, P1 domain, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027398 all species →	Domain	SecD export protein N-terminal TM domain	Interproscan
IPR022813 all species →	Family	Protein-export membrane protein SecD/SecF, archaeal and bacterial	Interproscan
IPR005791 all species →	Family	Protein translocase subunit SecD	Interproscan
IPR048634 all species →	Domain	Protein export membrane protein SecD/SecF, C-terminal	Interproscan
IPR022646 all species →	Conserved_site	Protein-export membrane protein SecD/SecF/SecDF, conserved site	Interproscan
IPR048631 all species →	Domain	Protein translocase subunit SecDF, P1 domain, N-terminal	Interproscan
IPR022645 all species →	Family	Protein-export membrane protein SecD/SecF, bacterial	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30081 all species →	PROTEIN-EXPORT MEMBRANE PROTEIN SEC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0015450 all species →	Molecular Function	protein-transporting ATPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03072	secD; preprotein translocase subunit SecD	-	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.