Gene detail

Detailed information of ANN27935-RA in Montipora grisea

Genomic Location: Scaffold_5776__1_contigs__length_28595:5994...7479
NR annotation: KAF1854047.1, hypothetical protein Lal_00005264 [Lupinus albus]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7HWT5	DNA-directed RNA polymerase subunit alpha OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=rpoA PE=3 SV=2
Q2W2L3	DNA-directed RNA polymerase subunit alpha OS=Paramagnetospirillum magneticum (strain ATCC 700264 / AMB-1) OX=342108 GN=rpoA PE=3 SV=1
Q9A8S9	DNA-directed RNA polymerase subunit alpha OS=Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15) OX=190650 GN=rpoA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012164 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01000 all species →	RNA_pol_A_bac	RNA polymerase Rpb3/RpoA insert domain	Domain	Interproscan
PF01193 all species →	RNA_pol_L	RNA polymerase Rpb3/Rpb11 dimerisation domain	Domain	Interproscan
PF03118 all species →	RNA_pol_A_CTD	Bacterial RNA polymerase, alpha chain C terminal domain	Domain	Interproscan
PF00411 all species →	Ribosomal_S11	Ribosomal protein S11	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036603 all species →	Homologous_superfamily	RNA polymerase, RBP11-like subunit	Interproscan
IPR018102 all species →	Conserved_site	Small ribosomal subunit protein uS11, conserved site	Interproscan
IPR036967 all species →	Homologous_superfamily	Small ribosomal subunit protein uS11 superfamily	Interproscan
IPR001971 all species →	Family	Small ribosomal subunit protein uS11	Interproscan
IPR036643 all species →	Homologous_superfamily	DNA-directed RNA polymerase, insert domain superfamily	Interproscan
IPR011262 all species →	Domain	DNA-directed RNA polymerase, insert domain	Interproscan
IPR011263 all species →	Domain	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	Interproscan
IPR019981 all species →	Family	Small ribosomal subunit protein uS11, bacterial-type	Interproscan
IPR011773 all species →	Family	DNA-directed RNA polymerase, alpha subunit	Interproscan
IPR011260 all species →	Domain	RNA polymerase, alpha subunit, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11759 all species →	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03040	rpoA; DNA-directed RNA polymerase subunit alpha	EC:2.7.7.6	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.