Gene detail

Detailed information of ANN27941-RA in Leptoseris scabra

Genomic Location: Scaffold_13__1_contigs__length_39802057:34641305...34696635
NR annotation: CAH3105808.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN27941-RA

ATGGAGAAAGAAGTGCGGGCAAGTATAGTATTTCTGGCCTGTTTGATGTTCTCAGCAGCTGGGATAATACAGGCAGATGATGTAAAGGAGCCTAGAGTGAAACATTTATTCGTACAAAGGCAATCGCCACTTCCAGGCGCCCCGCGAAAGTTGTTAAAGGTAGAACACGAACCTCTTGACAAGTCCAGCGGTGACGAAGATGCTCATAAAGTGTTTTCTCGTGTTCGTCGATCGTTGAATCCGGATAGGACTCCCAAAGTGAACACGTTTTCACTAAACGACAGTCACTACCTGGCCTACGTGCACTGGGCAGGGGATCACAGGGACACCATTGTGATGTTGACGCGGGATAAAAATCCAGGATTGCACAGTAACAGCCATGTGTGGATCTCCAAGGATTACGGCCAAAGCTTTGTAAATCGGACGTCATCCTTCATGGTATCAGATTTCGGCAATGCGTACGCGCTTATTAACATGTTTCATGCTTCGCCTGTGGATAACACAAAGTATCTTTTTGTTGACACTCGAAACAAACTGATATTTAACACAAGAGATGACTGCACAACGTTTTTTCGGAAGAGAGTAACATTTTCAGCAGATGAAATTTTCTTTCATCCAAGTAGTAGTGATGTCGTTTTGGCCTACGATGAGACAGCTTCAAAGCTTTACGTTTCCCGAGACTTTGGATTTACATGGACTTTGAAGGATGAGAATGTACGTTCCTATTACTGGGGTATTCCTCCATTTGACAATGCTAATACTTTGTATATTGAACGTGAACAAATTTCAGGTGGTCTTTCTACTGTGGTGAAAACTGATTATTTTTCCAACTTTGCTACAACATTAATTTCCAATGTGTACGACTTTAAAGTCTTTGACAACTACATGTTTGCTACAAAGCGATCGTCTTCTGGTTCTCTTACACTGATGGTGTCTCTAAACCGTACTGCATTCAAGCCAGCTCAAATTCCAACAAACAGTCCTGCCCAGGATTTTTTTGTTGCTGATGCATCAGAGAACCAAGTTTTCTTAGCAGTCACTCACAATCCAAGGACCAGTCACCTGTATATATCAGACACTTCTGGAACAAAGTACAGTTTGTCAATGGAAAGAGTACTTTACTTCTCACAGAATACAACTTCCGCATGGCTGAGGCGCTACATAGACGTATCATTTGTAGACTTGCACAAAGTGAAAGGGATGAGAGGAGTGTACATTGCAAGTCAGCTTACTGTGGGTCAAGTAGGACATCGCCATATCATGACCAAGATAACATTTGACAAAGGTGGAATGTGGCAACCAGTTGGAGCTCCTGATGTGGACAATTATGGAAATCCCTTGAACTGCAGTCTGCCAAGCTGCTCTCTGCATTTGTCTCAACAATTTGGATCATACCACCCTCGCACCCACTTCTCACCCATGAAGTCATGGAAAGCAGCTCCTGGAATTATCATGGCAACAGGTACCTTTGGTGTAAACCTGCGGTTTAATGCTGATATCTTCCTTTCAACTGATGCAGGAATGAGCTGGCACATGATTTTACAGACTCCTTGGTGGTGGTATAACCTTGGTGATCATGGTGGAATTTTCATTGCTGTTCCAAGATACAGGCTGACAAACTTGATTTATTACAGTTGGAATGAGGGTGAGACATGGTTGACATACAAGTTTCTGAACAACTCCTATATGCATGTCTATGGTCTTTTGACTGAGCCAGGTGAACAGAGTGCGGAGTTTACAATCTTTGGCTCCTACCCTGGTTGGCACAAGTGGGTTGTTGTGCAGATTGATTTAAAGGATGTGCTAGGTTCGTCATGCCGATCAGAAGATTACAAACAGTGGGTGCCACGTGATGAACAAAATGGCACTTGTTTATTGGGAAGAAAGATGGTTTATGAGCGGCGAATTTCTCATGCTCATTGTTACATTGGATATGACTATGATCGTCCAATTTCACAACAGAACTGTCCATGTGAGAGGGAGGACTTTGAATGTGATGTGGATTATGTTGATGCGGCTAATAATGAGTGCAGGCTTGATACTTCCAGTGGTGTTACACCAACCAGAATTCCACCATCATGTCGACCAGGCCTCACATATCGTCGCACAAAAGGATATCGAAAGGTTTCTGGAGACACATGCCAAGGAGGGGTAGAAGACCAGTATGCTGCGGAGATGGTTTCTTGTCCAATAAACGAACTGCCTGAATTCTTACTGTATGCTGCACGTACGTACATTCACAGAATCACACTTGGAGATCATGTAGAAACCACCATCCCTCTTGGTAGCGGACTAAGAAATGCAATTGCCTTAGACTATGACTACCAACAAAACTGCATTTACTGGGCTGACATTACACTGGACACCATCAAGCGTTCTTTCCTTAATGGATCTGGGATAATTGAGACCCTGCATGGTGGTATTCGGCAAGTGGAAGGGTTGGCATTAGATTGGCTGGGTGATAATATTTACTGGGTTGATGCTGGTGCTAGGAAGATAGAGGTCTCTAGGGCAGATGGACGCTTCCGCAAGAGCCTGTTCACCACAAATCTTGATCGACCCAGGGCAATTGCTCTAAATCCTAAAACAGGATACATGTATTGGACAGACTGGGGAACAAATGCGCGTATCGAGAGAGCATACATGTCTGGTGTGGGCCGAGCGGCAATAGTGTCTAGTTCTCTACAGTGGCCCAATGGCATTGCTATCGATTTTACTCAGCAAAAGCTGTACTGGACTGATGCTGGTTTGGACAAAATTGAGAGAAGCAACTTGGATGGAAGTTATCGACAGACGATAACTAGGATGGGCCTGCCTCACCCATATTCAATATCTGTATATGAAGATTCTATCTACTGGGATGACTGGTCAACACAGTCCATTCAAAAGGCCAACAAAAGAGATGGTGGAGCACGGCAAACAATCAAGTCACATGTGCGTGGCTTGATGGATCTTAAAGTTTTTCACCAGGATGTACAGACTGGTAATAACTCGTGCTCACGGTATAAGCCCTGTAGTCACATCTGCTTAGCTGTGCCCAATAGCTATGCTTGTGCTTGTCCTGATAACATGAGAACTGTGGTAGCTGCTTCTGGAAGGATAACCTGTGAGTGCCAACCTGGGGAATACATGGATTCCAATGGAGAATGTACAACACGAACTGGCACATGTCGCCCACTTGAGTTCAAGTGTACTAACAGCCGATGTATCCCATCTCACTGGAAGTGTGATCACGAAGATGACTGTGGAGACAATTCTGATGAACAAGGATGTCAGTACACCACATGCAGACCATCACAGTTTAGATGTGACAACGGTCTCTGCATATCTGCCTCATGGAAGTGCGATCATGACAATGATTGCCATGATAATTCTGATGAGAGAAACTGCAGTTATCCTACTTGCCGTTCAGACCAGTTTGCTTGCGACAACCACCGCTGTATTCCTAGACGTTGGATTTGTGATCTTGATGATGATTGCCGTGATGGCTCAGATGAACGAGGATGTACTCCAGCGCCTACAACCAGCTGTTCTTCTTCTCAGTTTGCTTGTCACAATGGTCGATGCATTCCGAGGAGTTGGTTTTGTGATGGTGACAATGATTGTGGAGATAGGAGTGATGAGCCGCTCCATTGCAGAGCAACCAGAACTTGCTCATCAAGTCAGTTCACTTGTACAAGTGGAAGTTGCATCCCTCTGGGATGGCAATGTGATGGAGACAATGACTGTGGTGATTACTCTGATGAGCGTGGCTGCACATATAACACCACCACTACTGCTCCTACCACACGGCCTACACGCTGTCGCTCGTACGAATACAGATGCTTCAATGGTCAATGTATTTACCAGTGGGATGTGTGCGATGGTGTCAGGGACTGTTCAGACAACTCAGATGAGTGGTTTTGTGCTACCACCATTAGGCCTACCTCTGGGAATACCACATCCACGACAACACCCTACACCGCCAGGCCATGCCACTACTGGGAGTTTACTTGCTCTAATGAACGTTGCATAAACAATGGCTTCAAGTGTGACGGACAAGATAACTGTGGAGATTGGAGTGATGAGAGAGGATGCCGTAAGTCCCACATCTTTTATGTTATTATCACGGAAACTCCGTTAACGATTTTAAGAAAAATGCTGAATTCAGCATGA

Transcript

ANN27941-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q98930	Sortilin-related receptor (Fragment) OS=Gallus gallus OX=9031 GN=SORL1 PE=2 SV=1
O88307	Sortilin-related receptor OS=Mus musculus OX=10090 GN=Sorl1 PE=1 SV=3
Q95209	Sortilin-related receptor OS=Oryctolagus cuniculus OX=9986 GN=SORL1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000636 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15902 all species →	Sortilin-Vps10	Sortilin, neurotensin receptor 3,	Repeat	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF15901 all species →	Sortilin_C	Sortilin, neurotensin receptor 3, C-terminal	Domain	Interproscan
PF00057 all species →	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR023415 all species →	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR031778 all species →	Domain	Sortilin, N-terminal	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR031777 all species →	Domain	Sortilin, C-terminal	Interproscan
IPR006581 all species →	Domain	VPS10	Interproscan
IPR050310 all species →	Family	VPS10-related sortilin family receptors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12106 all species →	SORTILIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006892 all species →	Biological Process	post-Golgi vesicle-mediated transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24498	SORL1; sortilin-related receptor	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.