Gene detail

Detailed information of ANN28000-RA in Montipora grisea

Genomic Location: Scaffold_429__1_contigs__length_97020:36430...38811
NR annotation: MCA9714798.1, endopeptidase La [Myxococcales bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN28000-RA

ATGACCCGAAACCACCCAGACTCCGGCACGCTTCCCCTCGTTTGTCTCTCGAACCTTCCGGCCTTCCCGGGGTCGGCGGCCCAGGTGGACTTGCCCCGTGGCACCACTGCTGCCAACGCAGTCCGCCATGCCCAACGGGACGCGAGTGCCAAGCTCGTGGTCCTCGGCGTGCGTCGTACCGAGGAACATCACCCGATTACACTAGAAGCCCTTCACCCCGTCGGGCTACTCGCAGAAATATTGCAATTACATGCAGGTATCCCCGGTCGCCTGGCAGTGATGGTGCGGGGGATTTGCCGGGTCAACCTCCTCGACATCCTCGACGAGCGCAACTACCAGGTCGTCCAGTTTGCAAAAACAGTCGAGGACCTCGGTGAGATCACCCTGTCGTATGCCCTCGCCGGTGCGCTGCAAGACCTCATCAAGCGCCACGACAGCCTGCTGCCGACGTCCAGCCGGACCAAGGCCAAAAGCCAGGCACTTACGGCCATTCAAAACCAGCGCCGGCCCTCGCAAGTCGCCGACATGGTCGCCTCGCACATCGAGCTCGAGCCCGAGGATCGGATTGGGCTTTTATGCGAGAAGACGATCACCGCCCGACTTCGCCGCGTGATCGAGTTGGTGTCGCACCGCGTCAACGTCTTGCAGGTCAAACGCGACCTCGACCGCTACGTCCGCGAACACCTATCCAAACACGAACAGGAAGCACTGCTTCGCCACAAGCTGCGGGCCATTCAATCCGAGCTCGGGGAGACGCCCAAGGCCCGCGAGCGCAATGATATTGAGGACCTCGAAAGTCGCCTCAACGCAGCTGACCTGCCCGAACATGCACGTGGTGCCGCCGACCGTGACCTCAACCGCCTGCGCCGGATGAACCCGCAGTCGAGCGAGGCAACCACCACCCGGATCTATCTCGAGTGGCTCGCCGACCTCCCGTGGACACGCAAGACCGAGGACAAGCTCGACCTCGCGGCTGCCCGCCAGCTGCTCGAGGACCAACACTACGGGCTTGAGAAGGTCAAAAAACGTGTGCTCGAGTACCTCAGTGTCCGCACCCTCGCCCCCGAAAAACGCGGACCGATCTTGTGTTTGGTCGGGCCACCGGGCGTCGGCAAAACCTCGCTCGGTCGCAGCATTGCTGAGGCGCTTGGCCGCGAGTACGTCCGCATCGCCCTCGGGGGCGTGCGCGACGACGCCGAAATCCGCGGTCACCGGCGGACCTACGTCGGTGCCCTGCCCGGCCGCCTGATCCAGGCGATGAAGCGGGCTGGCACCGTCAACCCGGTGGTCGTGCTCGACGAGATCGACAAGCTCGGTGGCCCCAACCTCCGCGGCGACCCGGCCTCGGCCCTGCTCGAGGCCCTCGATCCCGAGCAAAACAACGCCTTTAGCGACCACTACCTCAACATCGAATACGACCTGTCCAACGTCGTGTTTTTGACCACCGCCAACGACCTCGGCGGCATTCCCCACGTGCTGCGTGACCGCCTCGAGATCATCCGCCTCAGCGGCTACACCATCGAAGAAAAAGTTGCGATCGCCCGCGACTACTTGCTGCCCAAGCAGACCTCCGAGCACGGACTGACACCGCGGTTGTACACGCTCACCGACGAGGTATTGCTGACCCTTGCGACTGCATATACAAGGGAATCCGGGGTCCGCAACCTCGAGCGCAATCTCGCCTCGGTCCTGCGCCATGTCGCAATCGGGATCGCCGAGGGTCAGGCCACCCGGTTTGATGTCGACGTCGACGACCTCGAGCCGATTTTGGGACCACCGCGGTACCATCCGCAGCTGGCCGAAAAAGACCCTGCCCCGGGGGTTGTCACCGGCCTCGGGTGGACGGCGACCGGCGGAACCCTACTGTTTGTCGAAGCCACACTCACCCGTGGTACCGGCAACCTGCGCATGACTGGGCGACTCGGCGACGTGATGAAAGAGTCGGCCCAGGCCGCCCTGAGCCTTGTCCGCAGCCGGGCGAGCCGCTACGGGATCGACCCAAAGTTCATGGCGACGCACGACGTGCATGTACACTTTCCCGCCGGTGCCGTCCCCAAGGACGGCCCGAGCGCGGGCATTGCCGTGACCACCGCACTGATCTCGTCCCTCACCCAACGCGACGTCCGTGTCGATATCGCTATGACCGGCGAAATCACCCTCAAGGGTCACGTCTTGCCGATCGGTGGCGTCCGCGAAAAAGCCCTAGCGGCCCACCGAGCGGGGATCCGCGATGTCATCCTGCCCGAACGCAACCGCAAGGACGAGCCCCACATCCCCGAGCGTGCACGCCAAGATCTGCGGCTCCACTATGTCCGGACGATCGACGAAGTCCTCGCCCTCGCCCTGCGCGATGGCCCCGACACCGTCGCCGCTGCCCAATAG

Transcript

ANN28000-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P36774	Lon protease 2 OS=Myxococcus xanthus OX=34 GN=lon2 PE=1 SV=3
Q2IIK1	Lon protease OS=Anaeromyxobacter dehalogenans (strain 2CP-C) OX=290397 GN=lon PE=3 SV=1
P36772	Lon protease OS=Brevibacillus choshinensis OX=54911 GN=lon PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001329 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF05362 all species →	Lon_C	Lon protease (S16) C-terminal proteolytic domain	Domain	Interproscan
PF02190 all species →	LON_substr_bdg	ATP-dependent protease La (LON) substrate-binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR008269 all species →	Domain	Peptidase S16, Lon proteolytic domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR046336 all species →	Homologous_superfamily	Lon protease, N-terminal domain superfamily	Interproscan
IPR008268 all species →	Active_site	Peptidase S16, active site	Interproscan
IPR027065 all species →	Family	Lon protease	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004815 all species →	Family	Lon protease, bacterial/eukaryotic-type	Interproscan
IPR003111 all species →	Domain	Lon protease, N-terminal domain	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR027543 all species →	Family	Lon protease, bacterial	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10046 all species →	ATP DEPENDENT LON PROTEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0004176 all species →	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0030163 all species →	Biological Process	protein catabolic process	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01338	lon; ATP-dependent Lon protease	EC:3.4.21.53	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.