Gene detail

Detailed information of ANN28014-RA in Montipora grisea

Genomic Location: Scaffold_2618__1_contigs__length_41391:10078...12333
NR annotation: CUH41669.1, Glutamate--tRNA ligase [Ruegeria atlantica]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN28014-RA

ATGCGCCAGATTCGAGGCCCGCAGTTTTTCCAGCGACGCCTGCCCCATTCCGCTTCGGTCACCCGTGGTGACGGCAGCGGCGAATCCGCCGGTCTCACCGGGCAGGATGGCGCGGACCCGATCCGAGATCGCCATGCGCCACGCCGTCACCCGCACACCAGCCCGCCCGTCCTCCGCAGGCGCGGAGGTCAGGACCGGAACACGGGTGTAGCCGACGGCGCCAAGCTGTTGAAACCAGGCGTGTCGGCGGAAATCAAAACCTCCGGGCTCGACCGGACCTTGCGGCGGCGACAAATGCGCTGTGGTCATGATACGCTGCCCCGGCTTCAGATGCACAGGGTCGCCATGGACGGACAGCCGGATGCGCCACGGTTTCTGATCTGCAGGAACGTCCCCGATCCGCACCTGATCCAGAGTGATCCGCAGCGCATCCGACGCAGAGCGGTCCAGCGCCACGACCCGCCCCTCGACCGGGCCATAGTAGCGCCATTGCAGAACCGGCTCTGCAACCTTGTGAGCCCTTGCACCAGCAAGCAGAAATCCCGCCGCAATCAGCGCCAAAGCAATTGCCAGCGGCGACCATGCAACACCGATCCGGCGACTTGCCATCACGCAGCACAACATCAGCGCGGCAGCCGCAATATAGAGCCCCGCGCCGGGTTCAAACCGCAGGCTGAAATAGCAACCGATCCCTGCCGCCAGACAGATCGGCGACCATGGGAACAGATGCCCGCGTTGGTTCAGCAATGCAGCCTCGGCCCGTGCCAGAACACGCATGGTTGCCCCCGTCCTTCGGGCTGGGTAGATAGTCGCCAAACTATGCCCGCTACGGTTACCAAAAGGTTAATCCACACAATGTCCGATCAGGTCGTCACCCGTTTTGCCCCCTCTCCCACCGGCTTTCTGCACATCGGTGGCGCGCGCACCGCGCTGTTCAACTGGCTTTACGCCCGGGGTCGTGGCGGTAAGTTTCTGTTGCGGATCGAGGATACCGACCGCGAACGCTCCACCCCCGAAGCAACTGCCGCGATTCTGCAAGGTATGGAGTGGCTGGGGCTGAACCACGACGGCGACGTGATCAGCCAATTTGACGGCGCAGGCCGTCACGCCGAGATCGCGCATCAGCTTCTTGCCGAAGGTAAGGCGTATAAGTGTTTCTCGACGCAAGACGAGATCACCGCATTCCGCGAACAGGCACGGGCCGAAGGCAAGTCAACGCTGTTTCATAGCCCTTGGCGGGATGCTGATCCGGCCTCGCACCCGGACGCACCTTTCGTGATCCGCATCAAGGCCCCGCAGGAGGGCGCGACAGTGATCCGGGATCAGGTGCAGGGTGATGTGACGATCCGCAACGATCAGCTGGACGACATGATCCTTCTGCGCTCGGACGGTACACCGGTCTACATGCTGGCCGTCGTGGTAGACGATCACGACATGGGCGTCACCCACGTGATCCGGGGCGATGATCACCTGAACAACGCCGCCCGGCAAATGATGATCTACGAGGCGATGGGCTGGGATGTTCCGGTCTGGGCGCATATCCCGCTGATCCACGGACCGGACGGCAAGAAGCTTTCGAAACGTCATGGCGCGCTTGGGGCGCAGGAATACCAGGCGATGGGCTATCCCGCGGCCGGAATGCGCAACTATCTGGCCCGGCTGGGATGGAGCCACGGCGACGACGAATTCTTCACCGATGCACAGGCGCTGGAGTGGTTTGATCTGGACGGGATAGGCAAAAGCCCTGCGCGGTTCGATCTGAAAAAGCTCGAGAACCTATGTGGGCAACACATCGCCGCCTCGGAAGATGCTGCGTTGCGGCAGGAAATTCAGGCTTATCTGGCTGCCGCAGACCTTCCTTTGTTAAGCGATGCACAATCTGGTGATCTGGAGCGTGCGATGTATTGCCTCAAGGATCGGGCGCGAACCTTACCAGAACTGGTTGAAAAGGCTCACTTTGCGCTCACGTCGCGCCCAATTTCTCCGGACGAGAAAGCGGTAAAGGCGCTTTCGTCGGTATCCGACGGTATACTGGAAGAATTGACGCCGCATCTGCAAAATGTTAGCTGGTCCCGGAACGAACTGGAGGACACCCTGAATTCCTTCGCCGACGCGAAAGGGATCAAGTTCGGTAAGCTGGCCGGTCCGCTGCGTGCGGTGCTAGCCGGTCGGGCGGTCACACCTTCGGTTTTTGACATGATGCTCGTGCTGGGGCGGGATGAAACCCTGGCGCGGCTTTCTGATGCAGCGACTTAA

Transcript

ANN28014-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5LRH2	Glutamate--tRNA ligase 2 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=gltX2 PE=3 SV=1
Q1GHK0	Glutamate--tRNA ligase 1 OS=Ruegeria sp. (strain TM1040) OX=292414 GN=gltX1 PE=3 SV=1
Q163X3	Glutamate--tRNA ligase 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=gltX2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012537 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00749 all species →	tRNA-synt_1c	tRNA synthetases class I (E and Q), catalytic domain	Domain	Interproscan
PF19269 all species →	Anticodon_2	Anticodon binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR020058 all species →	Domain	Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain	Interproscan
IPR020751 all species →	Homologous_superfamily	Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2	Interproscan
IPR004527 all species →	Family	Glutamate-tRNA ligase, bacterial/mitochondrial	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR049940 all species →	Family	Glutamyl-Q tRNA(Asp) synthetase/Glutamate--tRNA ligase	Interproscan
IPR033910 all species →	Domain	Glutamyl-tRNA synthetase	Interproscan
IPR045462 all species →	Domain	Aminoacyl-tRNA synthetase, class I, anticodon-binding	Interproscan
IPR000924 all species →	Family	Glutamyl/glutaminyl-tRNA synthetase	Interproscan
IPR008925 all species →	Homologous_superfamily	Aminoacyl-tRNA synthetase, class I, anticodon-binding superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43311 all species →	GLUTAMATE--TRNA LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0043039 all species →	Biological Process	tRNA aminoacylation	Interproscan
GO:0004818 all species →	Molecular Function	glutamate-tRNA ligase activity	Interproscan
GO:0006424 all species →	Biological Process	glutamyl-tRNA aminoacylation	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01885	EARS, gltX; glutamyl-tRNA synthetase	EC:6.1.1.17	Prokaryotic defense system	ko02048	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.