Gene detail

Detailed information of ANN28021-RA in Montipora grisea

Genomic Location: Scaffold_527__1_contigs__length_88946:11697...13256
NR annotation: MCH8926181.1, protein translocase subunit SecD [Pseudomonadota bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4UKW3	Protein translocase subunit SecD OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=secD PE=3 SV=1
Q92H77	Protein translocase subunit SecD OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=secD PE=3 SV=1
Q1RIN3	Protein translocase subunit SecD OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=secD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012921 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07549 all species →	Sec_GG	SecD/SecF GG Motif	Motif	Interproscan
PF21760 all species →	SecD_1st	Protein translocase subunit SecDF, P1 domain, N-terminal	Domain	Interproscan
PF02355 all species →	SecD_SecF	Protein export membrane protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022646 all species →	Conserved_site	Protein-export membrane protein SecD/SecF/SecDF, conserved site	Interproscan
IPR001036 all species →	Family	Acriflavin resistance protein	Interproscan
IPR022645 all species →	Family	Protein-export membrane protein SecD/SecF, bacterial	Interproscan
IPR005791 all species →	Family	Protein translocase subunit SecD	Interproscan
IPR048631 all species →	Domain	Protein translocase subunit SecDF, P1 domain, N-terminal	Interproscan
IPR048634 all species →	Domain	Protein export membrane protein SecD/SecF, C-terminal	Interproscan
IPR022813 all species →	Family	Protein-export membrane protein SecD/SecF, archaeal and bacterial	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30081 all species →	PROTEIN-EXPORT MEMBRANE PROTEIN SEC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0015450 all species →	Molecular Function	protein-transporting ATPase activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03072	secD; preprotein translocase subunit SecD	-	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.