Gene detail

Detailed information of ANN28042-RA in Montipora grisea

Genomic Location: Scaffold_428__1_contigs__length_97169:91978...94332
NR annotation: EED32551.1, developmental regulator MorA [gamma proteobacterium NOR5-3]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN28042-RA

ATGAGCATTGCCAGTCGACTCAATCTGCTCATCGCCATAATGGCCGTCGTCGCCGGAGCGATCCTCACGGGTTTCGTGGGTCAACGCGACTACAGCTACCAGCGCGATGCGATCATGCTTGAGGCTTCCAGCCTTATCGGCAGTCAGCCACATCTGCAGCTGACCTTCTATTACCGCGACGAAGCAGAAGTTCGCAGAACCCTGGACCAGCTGTTGACGCTATCGCCAGCGGTGAAGCATGTCGTGCTTTATGACAATCAGGGAAAAGTTATCGACCAGCACCAGCGCAGCTGGGCCACCGACGCGCGCGTCACCTCCTTTGCGGAACTGCGCGAGGGGCTTTCTCCTCTGGACCAGGGCATAAAGACCGTCGGCGGTGAGCAGGTCCCCGAATCCCTGATGTTCCTGCGCAGCCTGCTGCTTGGTGAACGCAACACCTCCCTGACGCTTCCCGTTACTTCGGTGATCAACCCGGTGGAACGAGACCTGGAGCGCGAGGACTTCGCAAAAGCTCTGGTGGATCCGAGTCTGGTACGCAGCACCTTTGTTATCGGCTTTGTGGATATCTGCCTGAGTAGCACGGTGCTCTGGAGCCTCACCGCCCCGACCATCGCCCTATCTGCTGTCATCACGCTGGCGGTCGTCTTCCTGTTCTGGTTGATCGCCCGCGCGCTTACGCGACGCATTACGGCTCCTCTGGGGCGCCTCGCACGAGTAGCAGACGATATCGCCGCGGGTCGCCAGACCGAAACCCTGCGCATCGAGGGATCTGGTGAGATACGTCATATAGCCGAGATTTTTAACGGCATTATTACGGGCCTGCATCAGTACACGCGAAAAATGGACACGGATCGCAAGATCCTGTCGATGAAAGTCGATGAGCGCACGGAACAGCTCACGCAACATAAGGAAGAGCTCGACCGCGCCGTGCAGACCGTCAGCGAAACCCGCACCCAACTTCGTCATGCCGCCTACTTCGACAATCTGACTTCACTGCCTAACCGGCGCCTGTTCACAGAGCAGTTGACGCTGTTGCTTCGTTTGGCCAAGCGCAGCGGCCAGAACGTTGGTCTGCTGCTCGTGGACATCGACAACTTCAAGCGCATCAATGACTCGCTGGGCGCCAATTTTGGTGACCAGCTTTTGCAGCAGGTTGGAGAACGCCTGGCTGAGGGCGTGCGCGACAGCGACGTGCTGCACCGGCGCATCGATGACGAAGGCTCGGTAATGGACCTCTCACGCATGGGTGGAGATGAGTTCACCGTGGTGCTCAACCAGATCGAGAGCCTCGAGACCGCGGAGCGCGTTGCTTCACGCCTGGCCGAGGCCGTAGCCCGGCCCTACTTCATCGATCAGCAGGAGATCATCGTTACCTCAAGCGTCGGCGTAGCCGTGTCCCCCGATCACGCGGATGATGTCGAGGGCCTGCTCCGGGCCGCAGACACCGCCATGATCAGTGCGAAGAAACGCGGCAAAAACCGCATCATGACCTACAACGATGGCATGGAAGCGGCTAACCGGGAGCGCCTGCAACTGGAAAACGATCTACGCAAAGCCGTGGAGCGGAACCAGCTGCTGCTGCACTATCAACCGCAGGTCCATGGCCGTACCGGCGAGGTCACAGGCGTAGAGTCCCTCGTGCGCTGGAATCATCCGGACCAGGGTTTGGTACCGCCCTTCAAATGGATTCCCATTGCGGAGGAACTGGGACTCATTGAGGAGGTGGGCGCATGGGTACTACGCGAAGCCTGTTCTGAACTCGTGCGTCTGCGCAGCGAGGGCCTGGACCTGCCCAAGATTTCTGTGAACGTGTCCGCGCTTCAGTTCAATGAGGAATTCATCGATATCGTGAGTGAGGTACTGCGTGACACGGAGCTACCCCCCGAGGCGCTCGAGCTTGAGCTGACTGAAGGGGTCATGGTGAACAATCAGGCCACGACGGTGAGCATTGTCAGCCGCCTCAAGGACCTCGGCGTGAGGCTGTCGATCGATGACTTCGGCACGGGATACTCGTCCCTGAGCTACCTTACGCGCTTCCCGCTGAACGAACTCAAGATCGACCGCAGCTTTGTCCTTGGATTGACCGAAAGCGAGCAGAACGTGGAACTCGTTCGCGCCATCATCGCCATGGCCAAAAGCCTAGAGCTGGAGATTGTGGTCGAGGGTGTGGAACGAATCGAGGAGCTACAGTTCTTCAGGGAGCAGGACGTGGATCTGATTCAGGGCTTTCTGTTCAGCGCCCCCGTGCCCTCCGAGCGTCTGCGGGACCTGCTCAGCCCCGGCTTTTTCCTCGCCCAGTTGCAGGTTCTGGATCGAAAGCTCGAAGACAGCATGATCAAGATGGAGCAGGCCTGA

Transcript

ANN28042-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HYT3	Cyclic di-GMP phosphodiesterase NbdA OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=nbdA PE=1 SV=1
Q9I310	Bifunctional diguanylate cyclase/cyclic di-GMP phosphodiesterase MucR OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=mucR PE=1 SV=1
O34311	Signaling protein YkoW OS=Bacillus subtilis (strain 168) OX=224308 GN=ykoW PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010692 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00672 all species →	HAMP	HAMP domain	Domain	Interproscan
PF00990 all species →	GGDEF	Diguanylate cyclase, GGDEF domain	Domain	Interproscan
PF00563 all species →	EAL	EAL domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035919 all species →	Homologous_superfamily	EAL domain superfamily	Interproscan
IPR003660 all species →	Domain	HAMP domain	Interproscan
IPR000160 all species →	Domain	GGDEF domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR052155 all species →	Family	Bacterial biofilm regulation signaling protein	Interproscan
IPR001633 all species →	Domain	EAL domain	Interproscan
IPR029787 all species →	Homologous_superfamily	Nucleotide cyclase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44757 all species →	DIGUANYLATE CYCLASE DGCP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN28042-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.