Detailed information of ANN28050-RA in Montipora grisea

Genomic Location: Scaffold_246__1_contigs__length_134148:31097...33027
NR annotation: MBM3225119.1, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB [Candidatus Tectomicrobia bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P72943Probable ribosomal RNA small subunit methyltransferase B OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=rsmB PE=3 SV=1
P40117Ribulose-phosphate 3-epimerase 1 OS=Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) OX=381666 GN=rpe1 PE=3 SV=1
O34557Ribulose-phosphate 3-epimerase OS=Bacillus subtilis (strain 168) OX=224308 GN=rpe PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01189Methyltr_RsmB-F16S rRNA methyltransferase RsmB/FFamilyInterproscan
PF01029NusBNusB familyDomainInterproscan
PF00834Ribul_P_3_epimRibulose-phosphate 3 epimerase familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR026019FamilyRibulose-phosphate 3-epimeraseInterproscan
IPR049560DomainSAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreInterproscan
IPR001678DomainSAM-dependent methyltransferase RsmB-F/NOP2-type domainInterproscan
IPR000056FamilyRibulose-phosphate 3-epimerase-likeInterproscan
IPR013785Homologous_superfamilyAldolase-type TIM barrelInterproscan
IPR035926Homologous_superfamilyNusB-like superfamilyInterproscan
IPR011060Homologous_superfamilyRibulose-phosphate binding barrelInterproscan
IPR006027DomainNusB/RsmB/TIM44Interproscan
IPR018314Conserved_siteBacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved siteInterproscan
IPR004573FamilyrRNA small subunit methyltransferase BInterproscan
IPR023267FamilyRNA (C5-cytosine) methyltransferaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11749RIBULOSE-5-PHOSPHATE-3-EPIMERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004750Molecular FunctionD-ribulose-phosphate 3-epimerase activityInterproscan
GO:0006098Biological Processpentose-phosphate shuntInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0016857Molecular Functionracemase and epimerase activity, acting on carbohydrates and derivativesInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0009052Biological Processpentose-phosphate shunt, non-oxidative branchInterproscan
GO:0044262Biological Processobsolete cellular carbohydrate metabolic processInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0008649Molecular FunctionrRNA methyltransferase activityInterproscan
GO:0001510Biological ProcessRNA methylationInterproscan
GO:0008173Molecular FunctionRNA methyltransferase activityInterproscan

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