Genomic Location: Scaffold_6316__1_contigs__length_27322:367...12699
NR annotation: WP_207503340.1, transcription-repair coupling factor [Telluribacter humicola]
| CDS | ||||
| ANN28055-RA | ||||
| Transcript |
| ANN28055-RA |
| Protein |
| ANN28055-RA |
| Uniprot term | Description |
|---|---|
| P37474 | Transcription-repair-coupling factor OS=Bacillus subtilis (strain 168) OX=224308 GN=mfd PE=3 SV=1 |
| Q2FJD8 | Transcription-repair-coupling factor OS=Staphylococcus aureus (strain USA300) OX=367830 GN=mfd PE=3 SV=1 |
| Q2G0R8 | Transcription-repair-coupling factor OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=mfd PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03461 | TRCF | TRCF domain | Domain | Interproscan |
| PF00270 | DEAD | DEAD/DEAH box helicase | Domain | Interproscan |
| PF02559 | CarD_TRCF_RID | CarD-like/TRCF RID domain | Domain | Interproscan |
| PF03441 | FAD_binding_7 | FAD binding domain of DNA photolyase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003711 | Domain | CarD-like/TRCF, RNAP-interacting domain | Interproscan |
| IPR036134 | Homologous_superfamily | Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily | Interproscan |
| IPR001650 | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR005118 | Domain | Transcription-repair-coupling factor, C-terminal domain | Interproscan |
| IPR047112 | Family | ATP-dependent DNA helicase RecG/Transcription-repair-coupling factor | Interproscan |
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR036101 | Homologous_superfamily | CarD-like/TRCF, RNAP-interacting domain superfamily | Interproscan |
| IPR011545 | Domain | DEAD/DEAH box helicase domain | Interproscan |
| IPR037235 | Homologous_superfamily | TRCF-like, C-terminal D7 domain | Interproscan |
| IPR014001 | Domain | Helicase superfamily 1/2, ATP-binding domain | Interproscan |
| IPR005101 | Domain | Cryptochrome/DNA photolyase, FAD-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47964 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0006281 | Biological Process | DNA repair | Interproscan |
| GO:0003678 | Molecular Function | DNA helicase activity | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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